Index: reconstruction/BL01nxs.py
===================================================================
--- reconstruction/BL01nxs.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/BL01nxs.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,286 @@
+from mantid.simpleapi import *
+import json
+import time
+import sys
+import numpy
+import subprocess
+import os
+import matplotlib.pyplot as plt
+import glob
+import shutil
+import re
+
+def parseDaq(prepath,runno):
+    for i in range(10):
+        subprocess.check_call("python binary_hist.py "+runno+" "+str(i+1)+" "+prepath+" &", shell=True)
+    for i in range(10):
+        while not os.path.exists(prepath+"/tmpData/module"+str(i+1)+".dat"):
+            print "no data"
+            time.sleep(3)
+        print "module",str(i+1)," exists!"
+ 
+def parseMonitor(prepath, runno, monitor, pixels):
+    _cmd="./main "+runno+" "+monitor+" "+str(pixels)+" "+prepath
+    subprocess.check_call(_cmd, shell=True)
+    while not os.path.exists(prepath+"/tmpData/"+monitor+".dat"):
+        print "no data"
+        time.sleep(3)
+    print "finish parse monitor binary data for ", monitor
+    
+def getDaq(prepath, moduleList):
+    from xml.etree import ElementTree as ET
+    root = ET.parse('configure.xml')
+    tof  = root.find('tofInformation')
+    m_tofstart= int(tof.attrib['tofstart'])
+    m_tofstep = int(tof.attrib['tofstep'])
+    m_tofbins = int(tof.attrib['tofbin'])
+    tof = [m_tofstart+i*m_tofstep for i in xrange(m_tofbins+1)]
+    mpid=[]
+    value=[]
+    for name in moduleList:
+        for item in root.findall('type/component'):
+            if name== item.attrib['name']:
+                m_moduleinfo = item.attrib
+                idstart = int(m_moduleinfo['idstart'])
+                idsize  = int(m_moduleinfo['pixels'])
+                _tmp = [idstart+i*1 for i in xrange(idsize)]
+                for num in _tmp:
+                    mpid.append(num)
+        f0=open(prepath+'/tmpData/'+name+'.dat',"r")
+        _tmpv=json.load(f0)
+        v=[]
+        for ix in _tmpv:
+            for iy in ix:
+                v.append(iy)
+        for num in v:
+            value.append(num)
+    if len(mpid)*(len(tof)-1)==len(value):
+        return mpid, tof ,value   
+    else:
+        print "daq data match failed!"
+        #_cmd="rm -rf "+prepath+"/tmpData"
+        #subprocess.check_call(_cmd, shell=True)
+        sys.exit()
+
+def getMonitor(prepath, monitor, pixels):
+    mpid=[1+i for i in xrange(pixels)]
+    tof=[0+i for i in xrange(40001)]
+    f0=open(prepath+"/tmpData/"+monitor+".dat")
+    _tmpv=json.load(f0)
+    value=[]
+    for ix in _tmpv:
+        for iy in ix:
+            value.append(iy)
+    if len(mpid)*(len(tof)-1)==len(value):
+        return mpid, tof ,value   
+    else:
+        print "monitor data match failed!"
+        #_cmd="rm -rf "+prepath+"/tmpData"
+        #subprocess.check_call(_cmd, shell=True)
+        sys.exit()
+
+def checkNewRun():
+    prepath=sys.path[0]
+    rawpath="/opt/CSNSDATA/TS1/BL01/DAQ/Completed"
+    daqList=os.listdir(rawpath)
+    runList=os.listdir(prepath)
+    newList=[]
+    for name in daqList:
+        if name[0]=='R' and name[3]=='0':
+            if name in runList:
+                pass
+            else:
+                newList.append(name)
+    return newList
+
+
+# usage: python hist_nxs.py banknum 
+def createNexus(runNo):
+    runno="RUN"+str(runNo).zfill(7)
+
+    prepath=sys.path[0]+"/"+runno
+    prepath2=sys.path[0]
+    if os.path.exists(prepath):
+        pass
+    else:
+        os.mkdir(prepath)
+    tmp=prepath+'/tmpData'
+    if os.path.exists(tmp):
+        _cmd="rm -rf "+prepath+"/tmpData/*"
+        subprocess.check_call(_cmd, shell=True)
+    else:
+        os.mkdir(tmp)
+    print 'mkdir ', tmp 
+    moduleList=['module1','module2','module3','module4','module5','module6','module7','module8','module9','module10']
+    rawpath="/opt/CSNSDATA/TS1/BL01/DAQ/"+runno
+    xmlfile=glob.glob(os.path.join(rawpath, '*.xml'))
+    if len(xmlfile)==0:
+        print "no data in ",runno, " for DAQ"
+    else:
+        parseDaq(prepath, runno)
+        spid, stof, svalue = getDaq(prepath, moduleList)
+        LoadCSNSRaw(OutputWorkspace="sample", PixelID_bank=spid, TimeOfFlight_bank=stof, Counts_bank=svalue, PixelID_monitor=[0,1], TimeOfFlight_monitor=[0,16], Counts_monitor=[1,1])
+        LoadInstrument(Workspace="sample_1", Filename=prepath2+'/paramData/detector.xml', RewriteSpectraMap='True')
+        SaveNexus(InputWorkspace='sample_1', Filename=prepath+'/sample.nxs')
+        print 'finish save nexus for detector  ',time.strftime('%Y-%m-%dT%H:%M:%S.%03d+08:00')
+    monitorList=['Monitor1','Monitor2','Monitor3']
+    monitorPixel={}
+    monitorPixel['monitor1']=1024
+    monitorPixel['monitor2']=1
+    monitorPixel['monitor3']=1
+    for mname in monitorList:
+        rawpath="/opt/CSNSDATA/TS1/BL01/Monitor/Histogram/"+mname+"/"+runno
+        binfile=glob.glob(os.path.join(rawpath, '*.bin'))
+        if len(binfile)==0:
+            print "no data in ",runno, " for ",mname
+        else:
+            mname = mname.lower()
+            pixels=int(monitorPixel[mname])
+            parseMonitor(prepath, runno, mname, pixels)
+            mpid=[]
+            mtof=[]
+            mvalue=[]
+            mpid, mtof, mvalue = getMonitor(prepath, mname, pixels)
+            # mantid data processing
+            LoadCSNSRaw(OutputWorkspace=mname, PixelID_bank=[0,1], TimeOfFlight_bank=[0,8], Counts_bank=[1,1], PixelID_monitor=mpid, TimeOfFlight_monitor=mtof, Counts_monitor=mvalue)
+            CloneWorkspace(InputWorkspace=mname+'_2', OutputWorkspace=mname )
+            LoadInstrument(Workspace=mname+"_2", Filename=prepath2+'/paramData/'+mname+'.xml', RewriteSpectraMap='True')
+            SaveNexus(InputWorkspace=mname+'_2', Filename=prepath+'/'+mname+'.nxs')
+        try:
+            ConjoinWorkspaces(InputWorkspace1='monitor2',InputWorkspace2='monitor3',CheckOverlapping=False)
+            LoadInstrument(Workspace='monitor2', Filename=prepath2+'/paramData/monitors.xml', RewriteSpectraMap='True') 
+            SaveNexus(InputWorkspace='monitor2', Filename=prepath+'/monitors.nxs')
+        except:
+            pass
+    
+    print 'finish save nexus for monitors'
+    _cmd="rm -rf "+prepath+"/tmpData"
+    subprocess.check_call(_cmd, shell=True)
+
+    _cmd = 'scp -r '+runno+' transfer@10.1.26.156:/home/transfer/nexus/CSNSDATA/TS1/BL01/'
+    subprocess.check_call(_cmd, shell=True)
+    
+    f=open("./database/"+runno, "w")
+    f.close()
+
+    try:
+        f=open("complete", "w")
+        f.close()
+    except:
+        pass
+
+    _cmd = 'scp -r '+runno+' transfer@10.1.26.156:/home/transfer/nexus/CSNSDATA/TS1/BL01/'
+    subprocess.check_call(_cmd, shell=True)
+
+    _cmd = 'scp complete  transfer@10.1.26.156:/home/transfer/nexus/CSNSDATA/TS1/BL01/'+runno
+    subprocess.check_call(_cmd, shell=True)
+
+
+
+
+
+
+
+
+
+
+
+#!/usr/bin/python
+import sys
+import time
+import os
+import threading
+
+class main(threading.Thread):
+    def __init__(self):
+        threading.Thread.__init__(self)
+
+    def getRunNoList(self):
+        dir="/opt/CSNSDATA/TS1/BL01/Control/"
+        pattern="^RUN[0-9]{7}"
+        runNo=[]
+
+        for dirpath, dirnames, files in os.walk(dir):
+            for dirname in dirnames:
+                if re.match(pattern, dirname):
+                    runNo.append(int(dirname[3:]))
+
+        runNo.sort()
+        return runNo
+
+    def getNexusRunList(self):
+        dir=os.getcwd()+"/database/"
+        pattern="^RUN[0-9]{7}"
+        runNo=[]
+
+        runStr=glob.glob(dir+'RUN*')
+
+        for r in runStr:
+            runNo.append(int(r[-7:]))
+            
+        '''
+        for dirpath, dirnames, files in os.walk(dir):
+            for dirname in dirnames:
+                if re.match(pattern, dirname):
+                     runNo.append(int(dirname[3:]))
+        '''
+        runNo.sort()
+        return runNo
+
+    def getDaqCompleteList(self):
+        dir="/opt/CSNSDATA/TS1/BL01/DAQ/Completed/"
+        pattern="^RUN[0-9]{7}"
+        runNo=[]
+
+        runStr=glob.glob(dir+'RUN*')
+
+        for r in runStr:
+            if r[-7:].isdigit():
+                runNo.append(int(r[-7:]))
+            else:
+                pass
+
+        '''
+        for dirpath, dirnames, files in os.walk(dir):
+            for dirname in dirnames:
+                if re.match(pattern, dirname):
+                    runNo.append(int(dirname[3:]))
+        '''
+
+        runNo.sort()
+        return runNo
+
+
+
+    def process(self):
+        ctrlRunList=self.getRunNoList()
+        nexusRunList=self.getNexusRunList()
+        completeRunList=self.getDaqCompleteList()
+
+        newList=[]
+        for cRun in ctrlRunList:
+            if cRun not in nexusRunList and cRun in completeRunList:
+                newList.append(cRun)
+
+        print "to be reconstructed: ",newList
+        for runNo in newList:
+            _b=time.time()
+            print "begin:", runNo
+            createNexus(runNo)
+            print "end:", runNo, (time.time()-_b)/60.0
+
+    def run(self):
+        while True:
+            #try:
+            self.process()
+            #except:
+            #    pass
+            time.sleep(60.0)
+
+if __name__=="__main__":
+
+     threadDaemon = main()
+     threadDaemon.setDaemon(True)
+     threadDaemon.start()
+     threadDaemon.join()
+     sys.exit()
Index: reconstruction/DAQParser.py
===================================================================
--- reconstruction/DAQParser.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/DAQParser.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,114 @@
+#!/usr/bin/env python
+#-*- coding: UTF-8 -*-
+
+import sys, os, struct, time, io, calendar, datetime, pytz
+from collections import namedtuple
+
+
+def local2utc(local):
+    # Local datatime string to utc seconds.
+    #local='2018-03-26T15:28:42'
+    dateTimeString='%Y-%m-%dT%H:%M:%S'
+    localTimeZone = pytz.timezone("Asia/Shanghai")
+    localTime = datetime.datetime.strptime(local, dateTimeString)
+    #print "Local seconds: ", time.mktime(localTime.timetuple())
+    local_dt = localTimeZone.localize(localTime, is_dst=None)
+    #print "Local seconds: ", time.mktime(local_dt.timetuple())
+    utc_dt = local_dt.astimezone(pytz.utc)
+    utcSecond = calendar.timegm(utc_dt.timetuple())
+    print "local time string: ",local,", local_dt: ",local_dt, ", utc_dt", utc_dt, ", UTC seconds: ", utcSecond
+    return utcSecond
+
+
+def parseT0(filename, localStart, localEnd):
+
+    DaqModule = namedtuple('DaqModule', 'headerTag, beamlineId, detectorTypeId, moduleId, runMode, frequencyMode, version, reserve1, t0Count, reserve2, reserve3, t_39_8, h0, t_7_0, packed, tailTag, status, byteCount')
+
+    deltaSecond = 37
+    #utcStart='2018-03-15T06:28:42'
+    #utcEnd='2018-03-15T07:54:03'
+    
+    utcStartSecond=local2utc(localStart)
+    utcEndSecond=local2utc(localEnd)
+
+    #dateTimeString='%Y-%m-%dT%H:%M:%S'
+    #utcStartSecond = calendar.timegm(time.strptime(utcStart, dateTimeString))
+    taiStartSecond = utcStartSecond + deltaSecond
+    #print taiStartSecond
+    #utcEndSecond = calendar.timegm(time.strptime(utcEnd, dateTimeString))
+    taiEndSecond = utcEndSecond + deltaSecond
+    #print taiEndSecond
+
+    chunksize=40
+    print filename
+    with io.open(filename, 'rb') as f:
+        # Find the header of the module
+        headerFound = False
+        readCount = 0
+        while headerFound == False:
+            chunk = f.read(1)
+            readCount+=1
+            # The end of the file
+            if chunk == "":
+                print "Error: no header found!"
+                exit
+            if chunk == '\xfa' or chunk == '\xFA':
+                print "Header found at byte: ", readCount
+                headerFound = True
+                f.seek(-1, os.SEEK_CUR)
+        
+        list2 = []
+        #for i in range(8):
+        chunk = f.read(chunksize)
+        while chunk:
+            try:
+                module1 = DaqModule._make(struct.unpack('>BBBBBBBBLLLL3sBLB3sL',chunk))
+                #print module1
+                if module1.headerTag != 250 or module1.tailTag != 251:
+                    print "Wrong module!"
+                    continue
+
+                taiSec = (module1.t_39_8 << 8) + module1.t_7_0
+                utcSec = taiSec - deltaSecond
+                #utcSec = time.localtime(utcSec)
+                #print "TAI Seconds: ", taiSec
+                #print "UTC Date time: ", time.strftime('%Y-%m-%d %H:%M:%S', time.gmtime(utcSec))
+                #print "Local Date time: ", time.strftime('%Y-%m-%d %H:%M:%S', time.localtime(utcSec))
+                tag = (module1.packed >> 28)
+                #print tag 
+                # 8 ns
+                subSeconds = (module1.packed & 0x0fffffff) * 8
+                #print "Sub seconds:(ns) ", subSeconds
+
+                if taiSec > taiEndSecond:
+                    #True
+                    break
+                if taiSec == taiStartSecond:
+                    list1 = []
+                    list1.append(int(module1.t0Count))
+                    list1.append(int(taiSec))
+                    if len(list2) == 0:
+                        list2.append(list1)
+                    else:
+                        list2[0] = list1
+                if taiSec == taiEndSecond:
+                    list1 = []
+                    list1.append(int(module1.t0Count))
+                    list1.append(int(taiSec))
+                    list2.append(list1)
+                    break
+                if taiSec > taiStartSecond and taiSec < taiEndSecond:
+                    list1 = []
+                    list1.append(int(module1.t0Count))
+                    list1.append(int(taiSec))
+                    list2.append(list1)
+                
+            except Exception, ex:
+                #print ex.message
+                #pass
+                print "The last module is incompleted, skipped."
+                break
+            chunk = f.read(chunksize)
+            
+        #print list2
+        return list2[0][0],list2[-1][0]
Index: reconstruction/binary_hist.py
===================================================================
--- reconstruction/binary_hist.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/binary_hist.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,133 @@
+#!/usr/bin/env python
+# -*- coding:utf-8 -*-
+# author: H.L. TIAN 2017
+import DroNECore
+import sys
+import os
+import glob
+import re
+
+
+SANSgroup={}
+SANSgroup['module1']='module10'
+SANSgroup['module2']='module9'
+SANSgroup['module3']='module8'
+SANSgroup['module4']='module7'
+SANSgroup['module5']='module6'
+SANSgroup['module6']='module5'
+SANSgroup['module7']='module4'
+SANSgroup['module8']='module3'
+SANSgroup['module9']='module2'
+SANSgroup['module10']='module1'
+
+if __name__ == "__main__":
+
+    runnum = sys.argv[1] 
+    modulenum = int(sys.argv[2])
+    prepath = sys.argv[3] 
+    m_modulename = 'module'+str(modulenum)
+    from xml.etree import ElementTree as ET
+    root = ET.parse('configure.xml')
+    tof  = root.find('tofInformation')
+    factor = 80  # 25ns to 1us
+    m_tofstart= int(tof.attrib['tofstart'])*factor
+    m_tofstep = int(tof.attrib['tofstep'])*factor
+    m_tofbins = int(tof.attrib['tofbin'])
+    
+    threshold = root.find('threshold')
+    m_th_up   = int(threshold.attrib['up_value'])
+    m_th_down = int(threshold.attrib['down_value'])
+
+    for item in root.findall('type/component'):
+        if m_modulename== item.attrib['name']:
+            m_moduleinfo = item.attrib
+    idstart = int(m_moduleinfo['idstart'])
+    idsize  = int(m_moduleinfo['pixels'])
+
+    histname = prepath+'/tmpData/'+SANSgroup[m_modulename]+'.dat'
+
+    #parse daq xml
+    rawpath="/opt/CSNSDATA/TS1/BL01/DAQ/"+runnum+"/"
+
+    xmllist=glob.glob(os.path.join(rawpath, '*.xml'))
+    xmlfile=xmllist[0]
+    root = ET.parse(xmlfile)
+    #print root.tag
+    ns=''
+    nsmatch=re.match('\{.*\}', root.getroot().tag)
+    if nsmatch:
+        ns=nsmatch.group(0)
+        print ns
+
+
+    #ns="{http://xmlns.csns.ihep.ac.cn/xml/ns/descriptor}"
+    for item in root.findall(ns+'module'):
+        #print item
+        if item.attrib['id']== str(modulenum):
+            #print "modulenum: ",num
+            item = item.find(ns+'files')
+            filename = item.findtext(ns+'file')
+    print filename
+
+    T0start=1
+    T0end=35120000
+
+
+    #import Sniper
+    task = DroNECore.DroNE("task")
+    task.asTop()
+    task.setLogLevel(0)
+
+    import DataSvc
+    import CtrlSvc
+    #task.property("svcs").append("MRDataSvc/DataSvc")
+    task.property("svcs").append("SANSDataSvc/DataSvc")
+    task.property("svcs").append("CtrlSvc")
+    task.property("svcs").append("He3TRawDataInputSvcV02/DataInputSvc")
+    task.property("svcs").append("FileInputSvc/DataProvideSvc")
+    iDat = task.find("DataSvc")
+    iSvc = task.find("DataInputSvc")
+    iPvd = task.find("DataProvideSvc")
+
+    #filelist=["./rawData/BL01_RUN167_MODULE01_FILE001_20180111101729.dat"]
+    iPvd.property("InputFile").set(rawpath+filename)
+    iSvc.property("BuffSize").set(10000)
+
+    iSvc.show()
+    iPvd.show()
+
+    import Algorithms
+    task.property("algs").append("SANSHe3TRecAlg")
+    task.property("algs").append("SANSHe3TMapAlg")
+    task.property("algs").append("RunningInfAlg")
+    task.property("algs").append("SaveMatrix2JSONAlg") 
+
+    #calpath=prepath+"/factor_m"+str(modulenum)+".txt"
+    #print calpath
+    iRec = task.find("SANSHe3TRecAlg")
+    iRec.property("threshold_down").set(m_th_down)
+    iRec.property("threshold_up").set(m_th_up)
+    #iRec.property("calibration").set(calpath)
+    iRec.property("modulenum").set(modulenum)
+    iRec.property('T0start').set(T0start)
+    iRec.property('T0end').set(T0end)
+
+
+    iMap = task.find("SANSHe3TMapAlg")
+    iMap.property("bins").set(int(idsize/12.0))
+    iMap.show()
+    
+    iRun = task.find("RunningInfAlg")
+    iRun.property("TofStart").set(m_tofstart)
+    iRun.property("TofStep").set(m_tofstep)
+    iRun.property("TofBins").set(m_tofbins)
+
+    iMatrix = task.find("SaveMatrix2JSONAlg")
+    iMatrix.property("PIDStart").set(idstart)
+    iMatrix.property("PIDSize").set(idsize)
+    iMatrix.property("OutputFileName").set(histname)
+
+    task.setEvtMax(-1)
+    #task.initialize()
+    task.run()
+
Index: reconstruction/binary_hist_T0.py
===================================================================
--- reconstruction/binary_hist_T0.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/binary_hist_T0.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,135 @@
+#!/usr/bin/env python
+# -*- coding:utf-8 -*-
+# author: H.L. TIAN 2017
+import DroNECore
+import sys
+import os
+import glob
+import re
+
+
+SANSgroup={}
+SANSgroup['module1']='module10'
+SANSgroup['module2']='module9'
+SANSgroup['module3']='module8'
+SANSgroup['module4']='module7'
+SANSgroup['module5']='module6'
+SANSgroup['module6']='module5'
+SANSgroup['module7']='module4'
+SANSgroup['module8']='module3'
+SANSgroup['module9']='module2'
+SANSgroup['module10']='module1'
+
+if __name__ == "__main__":
+
+    runnum = sys.argv[1] 
+    modulenum = int(sys.argv[2])
+    prepath = sys.argv[3] 
+    m_modulename = 'module'+str(modulenum)
+
+    T0start=int(sys.argv[4])
+    T0end=int(sys.argv[5])
+
+    from xml.etree import ElementTree as ET
+    root = ET.parse('configure.xml')
+    tof  = root.find('tofInformation')
+    factor = 80  # 25ns to 1us
+    m_tofstart= int(tof.attrib['tofstart'])*factor
+    m_tofstep = int(tof.attrib['tofstep'])*factor
+    m_tofbins = int(tof.attrib['tofbin'])
+    
+    threshold = root.find('threshold')
+    m_th_up   = int(threshold.attrib['up_value'])
+    m_th_down = int(threshold.attrib['down_value'])
+
+    for item in root.findall('type/component'):
+        if m_modulename== item.attrib['name']:
+            m_moduleinfo = item.attrib
+    idstart = int(m_moduleinfo['idstart'])
+    idsize  = int(m_moduleinfo['pixels'])
+
+    histname = prepath+'/tmpData/'+SANSgroup[m_modulename]+'.dat'
+
+    #parse daq xml
+    rawpath="/opt/CSNSDATA/TS1/BL01/DAQ/"+runnum+"/"
+
+    xmllist=glob.glob(os.path.join(rawpath, '*.xml'))
+    xmlfile=xmllist[0]
+    root = ET.parse(xmlfile)
+    #print root.tag
+    ns=''
+    nsmatch=re.match('\{.*\}', root.getroot().tag)
+    if nsmatch:
+        ns=nsmatch.group(0)
+        print ns
+
+
+    #ns="{http://xmlns.csns.ihep.ac.cn/xml/ns/descriptor}"
+    for item in root.findall(ns+'module'):
+        #print item
+        if item.attrib['id']== str(modulenum):
+            #print "modulenum: ",num
+            item = item.find(ns+'files')
+            filename = item.findtext(ns+'file')
+    print filename
+
+
+
+    #import Sniper
+    task = DroNECore.DroNE("task")
+    task.asTop()
+    task.setLogLevel(0)
+
+    import DataSvc
+    import CtrlSvc
+    #task.property("svcs").append("MRDataSvc/DataSvc")
+    task.property("svcs").append("SANSDataSvc/DataSvc")
+    task.property("svcs").append("CtrlSvc")
+    task.property("svcs").append("He3TRawDataInputSvcV02/DataInputSvc")
+    task.property("svcs").append("FileInputSvc/DataProvideSvc")
+    iDat = task.find("DataSvc")
+    iSvc = task.find("DataInputSvc")
+    iPvd = task.find("DataProvideSvc")
+
+    #filelist=["./rawData/BL01_RUN167_MODULE01_FILE001_20180111101729.dat"]
+    iPvd.property("InputFile").set(rawpath+filename)
+    iSvc.property("BuffSize").set(10000)
+
+    iSvc.show()
+    iPvd.show()
+
+    import Algorithms
+    task.property("algs").append("SANSHe3TRecAlg")
+    task.property("algs").append("SANSHe3TMapAlg")
+    task.property("algs").append("RunningInfAlg")
+    task.property("algs").append("SaveMatrix2JSONAlg") 
+
+    #calpath=prepath+"/factor_m"+str(modulenum)+".txt"
+    #print calpath
+    iRec = task.find("SANSHe3TRecAlg")
+    iRec.property("threshold_down").set(m_th_down)
+    iRec.property("threshold_up").set(m_th_up)
+    #iRec.property("calibration").set(calpath)
+    iRec.property("modulenum").set(modulenum)
+    iRec.property('T0start').set(T0start)
+    iRec.property('T0end').set(T0end)
+
+
+    iMap = task.find("SANSHe3TMapAlg")
+    iMap.property("bins").set(int(idsize/12.0))
+    iMap.show()
+    
+    iRun = task.find("RunningInfAlg")
+    iRun.property("TofStart").set(m_tofstart)
+    iRun.property("TofStep").set(m_tofstep)
+    iRun.property("TofBins").set(m_tofbins)
+
+    iMatrix = task.find("SaveMatrix2JSONAlg")
+    iMatrix.property("PIDStart").set(idstart)
+    iMatrix.property("PIDSize").set(idsize)
+    iMatrix.property("OutputFileName").set(histname)
+
+    task.setEvtMax(-1)
+    #task.initialize()
+    task.run()
+
Index: reconstruction/configure.xml
===================================================================
--- reconstruction/configure.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/configure.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<configure  name="MR" valid-from="2017-01-29 00:00:00" valid-to="2050-01-29 00:00:00" last-modified="2017-06-29 00:00:00">
+    <type name="Bank1">
+        <component name="module1" moduleNum="1" server="Service_1" num="22" idstart="113501" pixels="1500" />
+        <component name="module2" moduleNum="2" server="Service_2" num="22" idstart="112001" pixels="1500" />
+        <component name="module3" moduleNum="3" server="Service_3" num="22" idstart="110501" pixels="1500" />
+        <component name="module4" moduleNum="4" server="Service_4" num="22" idstart="109001" pixels="1500" />
+        <component name="module5" moduleNum="5" server="Service_5" num="22" idstart="107501" pixels="1500" />
+        <component name="module6" moduleNum="6" server="Service_6" num="22" idstart="106001" pixels="1500" />
+        <component name="module7" moduleNum="7" server="Service_7" num="22" idstart="104501" pixels="1500" />
+        <component name="module8" moduleNum="8" server="Service_8" num="22" idstart="103001" pixels="1500" />
+        <component name="module9" moduleNum="9" server="Service_9" num="22" idstart="101501" pixels="1500" />
+        <component name="module10" moduleNum="10" server="Service_10" num="22" idstart="100001" pixels="1500" />
+    </type>
+    <tofInformation tofstart="0" tofstep="4" tofbin="10000" unit="microsecond" />
+    <threshold up_value="5000" down_value="2000" />
+    <command reductionCommand="False" />
+</configure>
Index: reconstruction/cropT0BL01nxs.py
===================================================================
--- reconstruction/cropT0BL01nxs.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/cropT0BL01nxs.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,200 @@
+from mantid.simpleapi import *
+import json
+import time
+import sys
+import numpy
+import subprocess
+import os
+import matplotlib.pyplot as plt
+import glob
+import shutil
+import re
+from xml.etree import ElementTree as ET
+
+
+def parseDaq(prepath,runno, T0start, T0end):
+    for i in range(10):
+        subprocess.check_call("python binary_hist.py "+runno+" "+str(i+1)+" "+prepath+" "+str(T0start)+" "+str(T0end)+" &", shell=True)
+    for i in range(10):
+        while not os.path.exists(prepath+"/tmpData/module"+str(i+1)+".dat"):
+            print "no data"
+            time.sleep(3)
+        print "module",str(i+1)," exists!"
+ 
+def parseMonitor(prepath, runno, monitor, pixels):
+    _cmd="./main "+runno+" "+monitor+" "+str(pixels)+" "+prepath
+    subprocess.check_call(_cmd, shell=True)
+    while not os.path.exists(prepath+"/tmpData/"+monitor+".dat"):
+        print "no data"
+        time.sleep(3)
+    print "finish parse monitor binary data for ", monitor
+    
+def getDaq(prepath, moduleList):
+    root = ET.parse('configure.xml')
+    tof  = root.find('tofInformation')
+    m_tofstart= int(tof.attrib['tofstart'])
+    m_tofstep = int(tof.attrib['tofstep'])
+    m_tofbins = int(tof.attrib['tofbin'])
+    tof = [m_tofstart+i*m_tofstep for i in xrange(m_tofbins+1)]
+    mpid=[]
+    value=[]
+    for name in moduleList:
+        for item in root.findall('type/component'):
+            if name== item.attrib['name']:
+                m_moduleinfo = item.attrib
+                idstart = int(m_moduleinfo['idstart'])
+                idsize  = int(m_moduleinfo['pixels'])
+                _tmp = [idstart+i*1 for i in xrange(idsize)]
+                for num in _tmp:
+                    mpid.append(num)
+        f0=open(prepath+'/tmpData/'+name+'.dat',"r")
+        _tmpv=json.load(f0)
+        v=[]
+        for ix in _tmpv:
+            for iy in ix:
+                v.append(iy)
+        for num in v:
+            value.append(num)
+    if len(mpid)*(len(tof)-1)==len(value):
+        return mpid, tof ,value   
+    else:
+        print "daq data match failed!"
+        sys.exit()
+
+def getMonitor(prepath, monitor, pixels):
+    mpid=[1+i for i in xrange(pixels)]
+    tof=[0+i for i in xrange(40001)]
+    f0=open(prepath+"/tmpData/"+monitor+".dat")
+    _tmpv=json.load(f0)
+    value=[]
+    for ix in _tmpv:
+        for iy in ix:
+            value.append(iy)
+    if len(mpid)*(len(tof)-1)==len(value):
+        return mpid, tof ,value   
+    else:
+        print "monitor data match failed!"
+        sys.exit()
+
+# usage: python hist_nxs.py banknum 
+def createNexus(runNo, T0start, T0end):
+    runno="RUN"+str(runNo).zfill(7)
+
+    prepath=sys.path[0]+"/"+runno
+    prepath2=sys.path[0]
+    if os.path.exists(prepath):
+        pass
+    else:
+        os.mkdir(prepath)
+    tmp=prepath+'/tmpData'
+    if os.path.exists(tmp):
+        _cmd="rm -rf "+prepath+"/tmpData/*"
+        subprocess.check_call(_cmd, shell=True)
+    else:
+        os.mkdir(tmp)
+    print 'mkdir ', tmp 
+    moduleList=['module1','module2','module3','module4','module5','module6','module7','module8','module9','module10']
+    rawpath="/opt/CSNSDATA/TS1/BL01/DAQ/"+runno
+    xmlfile=glob.glob(os.path.join(rawpath, '*.xml'))
+    if len(xmlfile)==0:
+        print "no data in ",runno, " for DAQ"
+    else:
+        parseDaq(prepath, runno, T0start, T0end)
+        spid, stof, svalue = getDaq(prepath, moduleList)
+        LoadCSNSRaw(OutputWorkspace="sample", PixelID_bank=spid, TimeOfFlight_bank=stof, Counts_bank=svalue, PixelID_monitor=[0,1], TimeOfFlight_monitor=[0,16], Counts_monitor=[1,1])
+        LoadInstrument(Workspace="sample_1", Filename=prepath2+'/paramData/detector.xml', RewriteSpectraMap='True')
+        SaveNexus(InputWorkspace='sample_1', Filename=prepath+'/sample.nxs')
+        print 'finish save nexus for detector  ',time.strftime('%Y-%m-%dT%H:%M:%S.%03d+08:00')
+    #monitorList=['Monitor1','Monitor2','Monitor3']
+    monitorList=[]
+    monitorPixel={}
+    monitorPixel['monitor1']=1024
+    monitorPixel['monitor2']=1
+    monitorPixel['monitor3']=1
+    for mname in monitorList:
+        rawpath="/opt/CSNSDATA/TS1/BL01/Monitor/Histogram/"+mname+"/"+runno
+        binfile=glob.glob(os.path.join(rawpath, '*.bin'))
+        if len(binfile)==0:
+            print "no data in ",runno, " for ",mname
+        else:
+            mname = mname.lower()
+            pixels=int(monitorPixel[mname])
+            parseMonitor(prepath, runno, mname, pixels)
+            mpid=[]
+            mtof=[]
+            mvalue=[]
+            mpid, mtof, mvalue = getMonitor(prepath, mname, pixels)
+            # mantid data processing
+            LoadCSNSRaw(OutputWorkspace=mname, PixelID_bank=[0,1], TimeOfFlight_bank=[0,8], Counts_bank=[1,1], PixelID_monitor=mpid, TimeOfFlight_monitor=mtof, Counts_monitor=mvalue)
+            CloneWorkspace(InputWorkspace=mname+'_2', OutputWorkspace=mname )
+            LoadInstrument(Workspace=mname+"_2", Filename=prepath2+'/paramData/'+mname+'.xml', RewriteSpectraMap='True')
+            SaveNexus(InputWorkspace=mname+'_2', Filename=prepath+'/'+mname+'.nxs')
+        try:
+            ConjoinWorkspaces(InputWorkspace1='monitor2',InputWorkspace2='monitor3',CheckOverlapping=False)
+            LoadInstrument(Workspace='monitor2', Filename=prepath2+'/paramData/monitors.xml', RewriteSpectraMap='True') 
+            SaveNexus(InputWorkspace='monitor2', Filename=prepath+'/monitors.nxs')
+        except:
+            pass
+    
+    print 'finish save nexus for monitors'
+    _cmd="rm -rf "+prepath+"/tmpData"
+    subprocess.check_call(_cmd, shell=True)
+
+    f=open("./database/"+runno, "w")
+    f.close()
+
+    try:
+        f=open("complete", "w")
+        f.close()
+    except:
+        pass
+
+    #_cmd = 'scp -r '+runno+' transfer@10.1.26.156:/home/transfer/nexus/CSNSDATA/TS1/BL01/'
+    #subprocess.check_call(_cmd, shell=True)
+
+    #_cmd = 'scp complete  transfer@10.1.26.156:/home/transfer/nexus/CSNSDATA/TS1/BL01/'+runno
+    #subprocess.check_call(_cmd, shell=True)
+
+def getT0(runno, localStart, localEnd):
+    # because T0 filename is not in xml, So it needs input the filepath
+    #parse daq xml
+    runnum=str(runno).zfill(7)
+    rawpath="/opt/CSNSDATA/TS1/BL01/DAQ/RUN"+runnum+"/"
+    print rawpath
+    xmllist=glob.glob(os.path.join(rawpath, '*.xml'))
+    print xmllist
+    xmlfile=xmllist[0]
+    root = ET.parse(xmlfile)
+    ns=''
+    nsmatch=re.match('\{.*\}', root.getroot().tag)
+    if nsmatch:
+        ns=nsmatch.group(0)
+        print ns
+    for item in root.findall(ns+'T0'):
+        #print item
+        item = item.find(ns+'files')
+        filename = item.findtext(ns+'file')
+    print filename
+    filepath=rawpath+filename
+    T0Start, T0End=DAQParser.parseT0(filepath, localStart, localEnd)
+    return T0Start, T0End
+
+
+#!/usr/bin/python
+import sys
+import time
+import os
+import DAQParser
+
+if __name__=="__main__":
+
+    runNo=511
+    localStart='2018-03-24T13:50:00'
+    localEnd='2018-03-29T13:55:02'
+
+    T0start, T0end=getT0(runNo, localStart, localEnd)
+    print T0start, T0end
+    _b=time.time()
+    print "begin:", runNo
+    createNexus(runNo, T0start, T0end)
+    print "end:", runNo, (time.time()-_b)/60.0
Index: reconstruction/paramData/detector.xml
===================================================================
--- reconstruction/paramData/detector.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/paramData/detector.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,42 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<instrument xmlns="http://www.mantidproject.org/IDF/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.mantidproject.org/IDF/1.0 Schema/IDFSchema.xsd" name="SANS" valid-from="2017-01-29 00:00:00" valid-to="2050-01-29 00:00:00" last-modified="2017-06-29 00:00:00">
+    <defaults>
+        <length unit="meter" />
+        <angle unit="degree" />
+        <reference-frame>
+            <along-beam axis="z" />
+            <pointing-up axis="y" />
+            <handedness val="right" />
+        </reference-frame>
+    </defaults>
+    <component type="moderator">
+        <location z="-12.0" />
+    </component>
+    <type is="Source" name="moderator" />
+    <component type="sample-position">
+        <location x="0.0" y="0.0" z="0.0" />
+    </component>
+    <type is="SamplePos" name="sample-position" />
+    <component type="Bank01">
+        <location />
+    </component>
+    <type name="Bank01">
+        <component type="panel" idfillbyfirst="x" idstart="100000" idstepbyrow="125">
+            <location name="module01" x="0.496" y="-0.50625" z="4.0">
+                <rot val="180" axis-x="0.0" axis-y="1.0" axis-z="0.0" />
+            </location>
+        </component>
+    </type>
+    <type is="rectangular_detector" name="panel" type="pixel" xpixels="125" xstep="0.008" xstart="0.0" ypixels="120" ystep="0.0085" ystart="0.0">
+        <properties />
+    </type>
+    <type is="detector" name="pixel">
+        <cuboid id="pixel-shape">
+            <left-front-bottom-point x="-0.004" y="-0.00425" z="0.0" />
+            <left-front-top-point x="-0.004" y="0.00425" z="0.0" />
+            <left-back-bottom-point x="-0.004" y="-0.00425" z="-0.0001" />
+            <right-front-bottom-point x="0.004" y="-0.00425" z="0.0" />
+        </cuboid>
+        <algebra val="pixel-shape" />
+    </type>
+</instrument>
Index: reconstruction/paramData/m56.xml
===================================================================
--- reconstruction/paramData/m56.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/paramData/m56.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,42 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<instrument xmlns="http://www.mantidproject.org/IDF/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.mantidproject.org/IDF/1.0 Schema/IDFSchema.xsd" name="SANS" valid-from="2017-01-29 00:00:00" valid-to="2050-01-29 00:00:00" last-modified="2017-06-29 00:00:00">
+    <defaults>
+        <length unit="meter" />
+        <angle unit="degree" />
+        <reference-frame>
+            <along-beam axis="z" />
+            <pointing-up axis="y" />
+            <handedness val="right" />
+        </reference-frame>
+    </defaults>
+    <component type="moderator">
+        <location z="-12.0" />
+    </component>
+    <type is="Source" name="moderator" />
+    <component type="sample-position">
+        <location x="0.0" y="0.0" z="0.0" />
+    </component>
+    <type is="SamplePos" name="sample-position" />
+    <component type="Bank01">
+        <location />
+    </component>
+    <type name="Bank01">
+        <component type="panel" idfillbyfirst="x" idstart="100000" idstepbyrow="125">
+            <location name="module01" x="0.496" y="-0.09825" z="4.0">
+                <rot val="180" axis-x="0.0" axis-y="1.0" axis-z="0.0" />
+            </location>
+        </component>
+    </type>
+    <type is="rectangular_detector" name="panel" type="pixel" xpixels="125" xstep="0.008" xstart="0.0" ypixels="24" ystep="0.0085" ystart="0.0">
+        <properties />
+    </type>
+    <type is="detector" name="pixel">
+        <cuboid id="pixel-shape">
+            <left-front-bottom-point x="-0.004" y="-0.00425" z="0.0" />
+            <left-front-top-point x="-0.004" y="0.00425" z="0.0" />
+            <left-back-bottom-point x="-0.004" y="-0.00425" z="-0.0001" />
+            <right-front-bottom-point x="0.004" y="-0.00425" z="0.0" />
+        </cuboid>
+        <algebra val="pixel-shape" />
+    </type>
+</instrument>
Index: reconstruction/paramData/monitor1.xml
===================================================================
--- reconstruction/paramData/monitor1.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/paramData/monitor1.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,1058 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<instrument xmlns="http://www.mantidproject.org/IDF/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.mantidproject.org/IDF/1.0 Schema/IDFSchema.xsd" name="sans" valid-from="2017-05-01 00:00:00" valid-to="2019-05-01 00:00:00" last-modified="2017-10-12 00:00:00">
+    <defaults>
+        <length unit="meter" />
+        <angle unit="degree" />
+        <reference-frame>
+            <along-beam axis="z" />
+            <pointing-up axis="y" />
+            <handedness val="right" />
+        </reference-frame>
+    </defaults>
+    <component type="moderator">
+        <location x="0" y="0" z="-11.8" />
+    </component>
+    <type is="Source" name="moderator" />
+    <component type="sample-position">
+        <location x="0.0" y="0.0" z="0.0" />
+    </component>
+    <type is="SamplePos" name="sample-position" />
+    <component type="monitor" idlist="monitor-list" name="GEM1">
+        <location x="0.02418" y="-0.02418" z="-5.62485" />
+        <location x="0.02262" y="-0.02418" z="-5.62485" />
+        <location x="0.02106" y="-0.02418" z="-5.62485" />
+        <location x="0.0195" y="-0.02418" z="-5.62485" />
+        <location x="0.01794" y="-0.02418" z="-5.62485" />
+        <location x="0.01638" y="-0.02418" z="-5.62485" />
+        <location x="0.01482" y="-0.02418" z="-5.62485" />
+        <location x="0.01326" y="-0.02418" z="-5.62485" />
+        <location x="0.0117" y="-0.02418" z="-5.62485" />
+        <location x="0.01014" y="-0.02418" z="-5.62485" />
+        <location x="0.00858" y="-0.02418" z="-5.62485" />
+        <location x="0.00702" y="-0.02418" z="-5.62485" />
+        <location x="0.00546" y="-0.02418" z="-5.62485" />
+        <location x="0.0039" y="-0.02418" z="-5.62485" />
+        <location x="0.00234" y="-0.02418" z="-5.62485" />
+        <location x="0.00078" y="-0.02418" z="-5.62485" />
+        <location x="-0.00078" y="-0.02418" z="-5.62485" />
+        <location x="-0.00234" y="-0.02418" z="-5.62485" />
+        <location x="-0.0039" y="-0.02418" z="-5.62485" />
+        <location x="-0.00546" y="-0.02418" z="-5.62485" />
+        <location x="-0.00702" y="-0.02418" z="-5.62485" />
+        <location x="-0.00858" y="-0.02418" z="-5.62485" />
+        <location x="-0.01014" y="-0.02418" z="-5.62485" />
+        <location x="-0.0117" y="-0.02418" z="-5.62485" />
+        <location x="-0.01326" y="-0.02418" z="-5.62485" />
+        <location x="-0.01482" y="-0.02418" z="-5.62485" />
+        <location x="-0.01638" y="-0.02418" z="-5.62485" />
+        <location x="-0.01794" y="-0.02418" z="-5.62485" />
+        <location x="-0.0195" y="-0.02418" z="-5.62485" />
+        <location x="-0.02106" y="-0.02418" z="-5.62485" />
+        <location x="-0.02262" y="-0.02418" z="-5.62485" />
+        <location x="-0.02418" y="-0.02418" z="-5.62485" />
+        <location x="0.02418" y="-0.02262" z="-5.62485" />
+        <location x="0.02262" y="-0.02262" z="-5.62485" />
+        <location x="0.02106" y="-0.02262" z="-5.62485" />
+        <location x="0.0195" y="-0.02262" z="-5.62485" />
+        <location x="0.01794" y="-0.02262" z="-5.62485" />
+        <location x="0.01638" y="-0.02262" z="-5.62485" />
+        <location x="0.01482" y="-0.02262" z="-5.62485" />
+        <location x="0.01326" y="-0.02262" z="-5.62485" />
+        <location x="0.0117" y="-0.02262" z="-5.62485" />
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+        <location x="-0.01014" y="0.0195" z="-5.62485" />
+        <location x="-0.0117" y="0.0195" z="-5.62485" />
+        <location x="-0.01326" y="0.0195" z="-5.62485" />
+        <location x="-0.01482" y="0.0195" z="-5.62485" />
+        <location x="-0.01638" y="0.0195" z="-5.62485" />
+        <location x="-0.01794" y="0.0195" z="-5.62485" />
+        <location x="-0.0195" y="0.0195" z="-5.62485" />
+        <location x="-0.02106" y="0.0195" z="-5.62485" />
+        <location x="-0.02262" y="0.0195" z="-5.62485" />
+        <location x="-0.02418" y="0.0195" z="-5.62485" />
+        <location x="0.02418" y="0.02106" z="-5.62485" />
+        <location x="0.02262" y="0.02106" z="-5.62485" />
+        <location x="0.02106" y="0.02106" z="-5.62485" />
+        <location x="0.0195" y="0.02106" z="-5.62485" />
+        <location x="0.01794" y="0.02106" z="-5.62485" />
+        <location x="0.01638" y="0.02106" z="-5.62485" />
+        <location x="0.01482" y="0.02106" z="-5.62485" />
+        <location x="0.01326" y="0.02106" z="-5.62485" />
+        <location x="0.0117" y="0.02106" z="-5.62485" />
+        <location x="0.01014" y="0.02106" z="-5.62485" />
+        <location x="0.00858" y="0.02106" z="-5.62485" />
+        <location x="0.00702" y="0.02106" z="-5.62485" />
+        <location x="0.00546" y="0.02106" z="-5.62485" />
+        <location x="0.0039" y="0.02106" z="-5.62485" />
+        <location x="0.00234" y="0.02106" z="-5.62485" />
+        <location x="0.00078" y="0.02106" z="-5.62485" />
+        <location x="-0.00078" y="0.02106" z="-5.62485" />
+        <location x="-0.00234" y="0.02106" z="-5.62485" />
+        <location x="-0.0039" y="0.02106" z="-5.62485" />
+        <location x="-0.00546" y="0.02106" z="-5.62485" />
+        <location x="-0.00702" y="0.02106" z="-5.62485" />
+        <location x="-0.00858" y="0.02106" z="-5.62485" />
+        <location x="-0.01014" y="0.02106" z="-5.62485" />
+        <location x="-0.0117" y="0.02106" z="-5.62485" />
+        <location x="-0.01326" y="0.02106" z="-5.62485" />
+        <location x="-0.01482" y="0.02106" z="-5.62485" />
+        <location x="-0.01638" y="0.02106" z="-5.62485" />
+        <location x="-0.01794" y="0.02106" z="-5.62485" />
+        <location x="-0.0195" y="0.02106" z="-5.62485" />
+        <location x="-0.02106" y="0.02106" z="-5.62485" />
+        <location x="-0.02262" y="0.02106" z="-5.62485" />
+        <location x="-0.02418" y="0.02106" z="-5.62485" />
+        <location x="0.02418" y="0.02262" z="-5.62485" />
+        <location x="0.02262" y="0.02262" z="-5.62485" />
+        <location x="0.02106" y="0.02262" z="-5.62485" />
+        <location x="0.0195" y="0.02262" z="-5.62485" />
+        <location x="0.01794" y="0.02262" z="-5.62485" />
+        <location x="0.01638" y="0.02262" z="-5.62485" />
+        <location x="0.01482" y="0.02262" z="-5.62485" />
+        <location x="0.01326" y="0.02262" z="-5.62485" />
+        <location x="0.0117" y="0.02262" z="-5.62485" />
+        <location x="0.01014" y="0.02262" z="-5.62485" />
+        <location x="0.00858" y="0.02262" z="-5.62485" />
+        <location x="0.00702" y="0.02262" z="-5.62485" />
+        <location x="0.00546" y="0.02262" z="-5.62485" />
+        <location x="0.0039" y="0.02262" z="-5.62485" />
+        <location x="0.00234" y="0.02262" z="-5.62485" />
+        <location x="0.00078" y="0.02262" z="-5.62485" />
+        <location x="-0.00078" y="0.02262" z="-5.62485" />
+        <location x="-0.00234" y="0.02262" z="-5.62485" />
+        <location x="-0.0039" y="0.02262" z="-5.62485" />
+        <location x="-0.00546" y="0.02262" z="-5.62485" />
+        <location x="-0.00702" y="0.02262" z="-5.62485" />
+        <location x="-0.00858" y="0.02262" z="-5.62485" />
+        <location x="-0.01014" y="0.02262" z="-5.62485" />
+        <location x="-0.0117" y="0.02262" z="-5.62485" />
+        <location x="-0.01326" y="0.02262" z="-5.62485" />
+        <location x="-0.01482" y="0.02262" z="-5.62485" />
+        <location x="-0.01638" y="0.02262" z="-5.62485" />
+        <location x="-0.01794" y="0.02262" z="-5.62485" />
+        <location x="-0.0195" y="0.02262" z="-5.62485" />
+        <location x="-0.02106" y="0.02262" z="-5.62485" />
+        <location x="-0.02262" y="0.02262" z="-5.62485" />
+        <location x="-0.02418" y="0.02262" z="-5.62485" />
+        <location x="0.02418" y="0.02418" z="-5.62485" />
+        <location x="0.02262" y="0.02418" z="-5.62485" />
+        <location x="0.02106" y="0.02418" z="-5.62485" />
+        <location x="0.0195" y="0.02418" z="-5.62485" />
+        <location x="0.01794" y="0.02418" z="-5.62485" />
+        <location x="0.01638" y="0.02418" z="-5.62485" />
+        <location x="0.01482" y="0.02418" z="-5.62485" />
+        <location x="0.01326" y="0.02418" z="-5.62485" />
+        <location x="0.0117" y="0.02418" z="-5.62485" />
+        <location x="0.01014" y="0.02418" z="-5.62485" />
+        <location x="0.00858" y="0.02418" z="-5.62485" />
+        <location x="0.00702" y="0.02418" z="-5.62485" />
+        <location x="0.00546" y="0.02418" z="-5.62485" />
+        <location x="0.0039" y="0.02418" z="-5.62485" />
+        <location x="0.00234" y="0.02418" z="-5.62485" />
+        <location x="0.00078" y="0.02418" z="-5.62485" />
+        <location x="-0.00078" y="0.02418" z="-5.62485" />
+        <location x="-0.00234" y="0.02418" z="-5.62485" />
+        <location x="-0.0039" y="0.02418" z="-5.62485" />
+        <location x="-0.00546" y="0.02418" z="-5.62485" />
+        <location x="-0.00702" y="0.02418" z="-5.62485" />
+        <location x="-0.00858" y="0.02418" z="-5.62485" />
+        <location x="-0.01014" y="0.02418" z="-5.62485" />
+        <location x="-0.0117" y="0.02418" z="-5.62485" />
+        <location x="-0.01326" y="0.02418" z="-5.62485" />
+        <location x="-0.01482" y="0.02418" z="-5.62485" />
+        <location x="-0.01638" y="0.02418" z="-5.62485" />
+        <location x="-0.01794" y="0.02418" z="-5.62485" />
+        <location x="-0.0195" y="0.02418" z="-5.62485" />
+        <location x="-0.02106" y="0.02418" z="-5.62485" />
+        <location x="-0.02262" y="0.02418" z="-5.62485" />
+        <location x="-0.02418" y="0.02418" z="-5.62485" />
+    </component>
+    <type name="monitor" is="monitor">
+        <cuboid id="pixel-shape">
+            <left-front-bottom-point x="-0.00775" y="-0.00775" z="0.00005" />
+            <left-front-top-point x="-0.00775" y="0.00775" z="0.00005" />
+            <left-back-bottom-point x="-0.00775" y="-0.00775" z="-0.00005" />
+            <right-front-bottom-point x="0.00775" y="-0.00775" z="0.00005" />
+        </cuboid>
+        <algebra val="pixel-shape" />
+    </type>
+    <idlist idname="monitor-list">
+        <id start="1" end="1024" />
+    </idlist>
+</instrument>
Index: reconstruction/paramData/monitor2.xml
===================================================================
--- reconstruction/paramData/monitor2.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/paramData/monitor2.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<instrument xmlns="http://www.mantidproject.org/IDF/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.mantidproject.org/IDF/1.0 Schema/IDFSchema.xsd" name="sans" valid-from="2017-05-01 00:00:00" valid-to="2019-05-01 00:00:00" last-modified="2017-10-12 00:00:00">
+    <defaults>
+        <length unit="meter" />
+        <angle unit="degree" />
+        <reference-frame>
+            <along-beam axis="z" />
+            <pointing-up axis="y" />
+            <handedness val="right" />
+        </reference-frame>
+    </defaults>
+    <component type="moderator">
+        <location x="0" y="0" z="-11.8" />
+    </component>
+    <type is="Source" name="moderator" />
+    <component type="sample-position">
+        <location x="0.0" y="0.0" z="0.0" />
+    </component>
+    <type is="SamplePos" name="sample-position" />
+    <component type="monitor" idlist="monitor-list" name="GEM2">
+        <location x="0.0" y="0.0" z="-0.61485" />
+    </component>
+    <type name="monitor" is="monitor">
+        <cuboid id="pixel-shape">
+            <left-front-bottom-point x="-0.032" y="-0.0255" z="0.00005" />
+            <left-front-top-point x="-0.032" y="0.0255" z="0.00005" />
+            <left-back-bottom-point x="-0.032" y="-0.0255" z="-0.00005" />
+            <right-front-bottom-point x="0.032" y="-0.0255" z="0.00005" />
+        </cuboid>
+        <algebra val="pixel-shape" />
+    </type>
+    <idlist idname="monitor-list">
+        <id val="1" />
+    </idlist>
+</instrument>
Index: reconstruction/paramData/monitor3.xml
===================================================================
--- reconstruction/paramData/monitor3.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/paramData/monitor3.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<instrument xmlns="http://www.mantidproject.org/IDF/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.mantidproject.org/IDF/1.0 Schema/IDFSchema.xsd" name="sans" valid-from="2017-05-01 00:00:00" valid-to="2019-05-01 00:00:00" last-modified="2017-10-12 00:00:00">
+    <defaults>
+        <length unit="meter" />
+        <angle unit="degree" />
+        <reference-frame>
+            <along-beam axis="z" />
+            <pointing-up axis="y" />
+            <handedness val="right" />
+        </reference-frame>
+    </defaults>
+    <component type="moderator">
+        <location x="0" y="0" z="-11.8" />
+    </component>
+    <type is="Source" name="moderator" />
+    <component type="sample-position">
+        <location x="0.0" y="0.0" z="0.0" />
+    </component>
+    <type is="SamplePos" name="sample-position" />
+    <component type="monitor" idlist="monitor-list" name="GEM3">
+        <location x="0.0" y="0.0" z="0.548" />
+    </component>
+    <type name="monitor" is="monitor">
+        <cuboid id="pixel-shape">
+            <left-front-bottom-point x="-0.012" y="-0.012" z="0.00005" />
+            <left-front-top-point x="-0.012" y="0.012" z="0.00005" />
+            <left-back-bottom-point x="-0.012" y="-0.012" z="-0.00005" />
+            <right-front-bottom-point x="0.012" y="-0.012" z="0.00005" />
+        </cuboid>
+        <algebra val="pixel-shape" />
+    </type>
+    <idlist idname="monitor-list">
+        <id val="1" />
+    </idlist>
+</instrument>
Index: reconstruction/paramData/monitors.xml
===================================================================
--- reconstruction/paramData/monitors.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reconstruction/paramData/monitors.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,41 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<instrument xmlns="http://www.mantidproject.org/IDF/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.mantidproject.org/IDF/1.0 Schema/IDFSchema.xsd" name="sans" valid-from="2017-05-01 00:00:00" valid-to="2019-05-01 00:00:00" last-modified="2017-10-12 00:00:00">
+    <defaults>
+        <length unit="meter" />
+        <angle unit="degree" />
+        <reference-frame>
+            <along-beam axis="z" />
+            <pointing-up axis="y" />
+            <handedness val="right" />
+        </reference-frame>
+    </defaults>
+    <component type="moderator">
+        <location x="0" y="0" z="-11.8" />
+    </component>
+    <type is="Source" name="moderator" />
+    <component type="sample-position">
+        <location x="0.0" y="0.0" z="0.0" />
+    </component>
+    <type is="SamplePos" name="sample-position" />
+    <component type="monitor" idlist="monitor-list2" name="GEM2">
+        <location x="0.0" y="0.0" z="-0.61485" />
+    </component>
+    <component type="monitor" idlist="monitor-list3" name="GEM3">
+        <location x="0.0" y="0.0" z="0.548" />
+    </component>
+    <type name="monitor" is="monitor">
+        <cuboid id="pixel-shape">
+            <left-front-bottom-point x="-0.032" y="-0.0255" z="0.00005" />
+            <left-front-top-point x="-0.032" y="0.0255" z="0.00005" />
+            <left-back-bottom-point x="-0.032" y="-0.0255" z="-0.00005" />
+            <right-front-bottom-point x="0.032" y="-0.0255" z="0.00005" />
+        </cuboid>
+        <algebra val="pixel-shape" />
+    </type>
+    <idlist idname="monitor-list2">
+        <id val="1" />
+    </idlist>
+    <idlist idname="monitor-list3">
+        <id val="2" />
+    </idlist>
+</instrument>
Index: reduction/canvas.py
===================================================================
--- reduction/canvas.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/canvas.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,249 @@
+#!/usr/bin/python
+# -*- coding: utf-8 -*-
+
+# for pyqt4
+
+from PyQt4 import QtCore, QtGui
+from PyQt4 import Qt
+
+import matplotlib
+from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg
+from matplotlib.figure import Figure
+from matplotlib.patches import Rectangle
+
+class figureCanvas(FigureCanvasQTAgg):
+
+    def __init__(
+        self,
+        parent=None,
+        width=3,
+        height=2,
+        dpi=150,
+        plotColor = '',
+        title='',
+        xlabel='',
+        ylabel='',
+        ):
+
+        self.fig = Figure(
+            figsize=(width, height),
+            dpi=dpi,
+            facecolor='white',
+            edgecolor=None,
+            linewidth=1.0,
+            frameon=False,
+            )
+
+        self.fig.patch.set_alpha(0.1)
+        self.ax = self.fig.add_subplot(111)  # axisbg='r'
+        self.ax.tick_params(axis='both', which='major', labelsize=5)
+        self.fig.subplots_adjust(left=0.12, bottom=0.25, right=0.95,
+                                 top=0.95)
+
+        self.xtitle = ''
+        self.ytitle = ''
+
+        self.ax.set_xlabel(xlabel, fontsize=5)
+        self.ax.set_ylabel(ylabel, fontsize=5)
+
+        self.plotColor = plotColor
+        self.title = title
+        self.grid_status = True
+        self.xaxis_style = 'linear'
+        self.yaxis_style = 'linear'
+        #self.ax.hold(True)
+
+        # self.ax.patch.set_alpha(0)
+
+        FigureCanvasQTAgg.__init__(self, self.fig)
+        FigureCanvasQTAgg.setSizePolicy(self, QtGui.QSizePolicy.Expanding,
+                                   QtGui.QSizePolicy.Expanding)
+        FigureCanvasQTAgg.updateGeometry(self)
+
+        self.draw()
+
+class zoomCanvas(FigureCanvasQTAgg):
+
+    def __init__(
+        self,
+        parent=None,
+        width=3,
+        height=2,
+        dpi=150,
+        plotColor = '',
+        title='',
+        xlabel='',
+        ylabel='',
+        ):
+
+        self.fig = Figure(
+            figsize=(width, height),
+            dpi=dpi,
+            facecolor='white',
+            edgecolor=None,
+            linewidth=1.0,
+            frameon=False,
+            tight_layout=False,
+            )
+
+        self.fig.patch.set_alpha(0.1)
+        self.ax = self.fig.add_subplot(111)  # axisbg='r'
+        self.ax.tick_params(axis='both', which='major', labelsize=5)
+        self.fig.subplots_adjust(left=0.12, bottom=0.25, right=0.95,
+                                 top=0.95)
+
+        self.xtitle = ''
+        self.ytitle = ''
+
+        self.ax.set_xlabel(xlabel, fontsize=5)
+        self.ax.set_ylabel(ylabel, fontsize=5)
+
+        self.plotColor = plotColor
+        self.title = title
+        self.grid_status = True
+        self.xaxis_style = 'linear'
+        self.yaxis_style = 'linear'
+
+        FigureCanvasQTAgg.__init__(self, self.fig)
+        FigureCanvasQTAgg.setSizePolicy(self, QtGui.QSizePolicy.Expanding,
+                                   QtGui.QSizePolicy.Expanding)
+        FigureCanvasQTAgg.updateGeometry(self)
+
+        self.rect = Rectangle((0,0), 0, 0, facecolor='None', edgecolor='black', alpha=0.8,zorder=5)
+        self.ax.add_patch(self.rect)
+
+        self.draw()
+
+        self.zoomClick = False
+        self.zoomSelected = False
+        self.minX = 0
+        self.maxX = 0
+        self.minY = 0
+        self.maxY = 0
+
+        self.zoomEvents()
+
+    def zoomEvents(self):
+        self.mpl_connect('button_press_event',   self.zoomFigurePress)
+        self.mpl_connect('button_release_event', self.zoomFigureRelease)
+        self.mpl_connect('motion_notify_event',  self.zoomFigureMove)
+
+    def zoomFigurePress(self,event):
+        if event.button==1:
+            self.zoomClick=True
+            self.zoomSelected = True
+            self.x1 = event.xdata
+            self.y1 = event.ydata
+        elif event.button==3:
+            self.ax.autoscale(enable=True)
+            self.draw()
+            self.zoomSelected = False
+            #self.roiSelected = False
+            self.rect.set_width(0)
+            self.rect.set_height(0)
+        else:
+            return
+
+    def zoomFigureMove(self, event):
+        if event.button==1 and self.zoomClick==True and self.x1 and self.y1 and event.xdata and event.ydata:
+
+            self.rect.set_x(self.x1)
+            self.rect.set_y(self.y1)
+            self.rect.set_width(event.xdata - self.x1)
+            self.rect.set_height(event.ydata - self.y1)
+            #self.rect.set_xy((self.x0, self.y0))
+            self.draw()
+        else:
+            return
+
+    def zoomFigureRelease(self, event):
+        self.zoomClick=False
+
+        if event.button==1 and self.x1 and self.y1 and event.xdata and event.ydata:
+            self.x2 = event.xdata
+            self.y2 = event.ydata
+
+            #self.rect.set_width(0)
+            #self.rect.set_height(0)
+
+            self.minX=min(self.x1,self.x2)
+            self.maxX=max(self.x1,self.x2)
+            if self.minX != self.maxX:
+                self.ax.set_xlim(self.minX, self.maxX)
+            self.minY=min(self.y1,self.y2)
+            self.maxY=max(self.y1,self.y2)
+            if self.minY != self.maxY:
+                self.ax.set_ylim(self.minY, self.maxY)
+            self.draw()
+        else:
+            return
+
+
+class blankCanvas(FigureCanvasQTAgg):
+
+    def __init__(
+        self,
+        parent=None,
+        width=3,
+        height=2,
+        dpi=150,
+        ):
+
+        self.fig = Figure(
+            figsize=(width, height),
+            dpi=dpi,
+            facecolor=None,
+            edgecolor=None,
+            linewidth=0.0,
+            frameon=False,
+            tight_layout=False,
+            )
+
+        self.fig.patch.set_alpha(0.0)
+        self.ax = self.fig.add_subplot(111, alpha=0.0, aspect=1.5)
+        self.ax.get_xaxis().set_visible(False)
+        self.ax.get_yaxis().set_visible(False)
+        self.ax.set_axis_off()
+        self.ax.set_frame_on(False)
+        self.fig.subplots_adjust(left=0, bottom=0, right=1,top=1)
+
+        self.ax.patch.set_alpha(0.0)
+        FigureCanvasQTAgg.__init__(self, self.fig)
+        FigureCanvasQTAgg.setSizePolicy(self, QtGui.QSizePolicy.Expanding,
+                                   QtGui.QSizePolicy.Expanding)
+
+        FigureCanvasQTAgg.updateGeometry(self)
+
+        self.draw()
+
+class xkcdFigure(FigureCanvasQTAgg):
+
+    def __init__(
+        self,
+        parent=None,
+        width=1,
+        height=1,
+        dpi=150,
+        ):
+
+        self.fig = Figure(
+            (width, height),
+            dpi=150,
+            facecolor='white',
+            edgecolor=None,
+            frameon=False,
+            tight_layout=False,
+            )
+
+        self.ax = self.fig.add_subplot(111)
+        #self.ax.set_axis_off()
+        self.ax.get_xaxis().set_visible(False)
+        self.ax.get_yaxis().set_visible(False)
+        #self.line, =self.ax.plot([], [], color="g")
+
+        FigureCanvasQTAgg.__init__(self, self.fig)
+        FigureCanvasQTAgg.setSizePolicy(self, QtGui.QSizePolicy.Expanding,
+                                   QtGui.QSizePolicy.Expanding)
+
+        FigureCanvasQTAgg.updateGeometry(self)
+
Index: reduction/conf/__init__.py
===================================================================
--- reduction/conf/__init__.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/conf/__init__.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,3 @@
+#!/usr/bin/python
+# -*- coding: utf-8 -*-
+
Index: reduction/conf/configure.json
===================================================================
--- reduction/conf/configure.json	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/conf/configure.json	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,1 @@
+{"mainHeight": 624, "mainWidth": 1120}
Index: reduction/conf/constants.py
===================================================================
--- reduction/conf/constants.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/conf/constants.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,99 @@
+#!/usr/bin/python
+# -*- coding: utf-8 -*-
+
+import sys
+import os
+import math
+import numpy as np
+
+# import scipy
+
+# ipython
+
+import sip
+sip.setapi(u'QDate', 2)
+sip.setapi(u'QDateTime', 2)
+sip.setapi(u'QString', 2)
+sip.setapi(u'QTextStream', 2)
+sip.setapi(u'QTime', 2)
+sip.setapi(u'QUrl', 2)
+sip.setapi(u'QVariant', 2)
+
+# pyqt4
+
+from PyQt4 import QtCore, QtGui
+from PyQt4 import Qt
+
+# matplot
+
+import matplotlib
+from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
+from matplotlib.figure import Figure
+from mpl_toolkits.mplot3d import axes3d
+import matplotlib.pyplot as plt
+from matplotlib import cm
+from matplotlib.patches import Rectangle
+import matplotlib.ticker as ticker
+
+import logging
+# opengl
+# import vtk
+
+# sys.path.insert(0, os.path.dirname(os.path.abspath(__file__)))
+
+
+# TextEdit Height
+
+CSNStextMaximumHeight = 26
+CSNStextMaximumWidth = 100
+CSNStextMinimumHeight = 10
+CSNStextMinimumWidth = 140
+
+# Table Height
+
+CSNStableMinimumHeight = 100
+
+# unit mm
+
+CSNSMRslit1Height = 20
+CSNSMRslit2Height = 12.7
+CSNSMRsampleHeight = 10
+
+CSNSMRsamplePosition = 0
+CSNSMRslit1Position = -2315
+CSNSMRslit2Position = -635
+CSNSMRslit3Position = 650
+
+# pixmap size
+
+CSNSPixmapHeight = 20
+CSNSPixmapWidth = 20
+
+# sizePolicy
+
+CSNSsizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Expanding,
+                                   QtGui.QSizePolicy.Expanding)
+CSNSsizePolicy.setHorizontalStretch(1)
+CSNSsizePolicy.setVerticalStretch(1)
+
+# histogram combobox choose
+
+CSNSBackwardConstant = 40000
+CSNSMediumConstant = 30000
+CSNSSmallConstant = 20000
+
+# thread ID
+
+CSNSThreadID = 1
+
+#
+
+mainWidth = 0
+mainHeight = 0
+
+# control status
+# global CSNSControllerStatus
+
+CSNSControllerStatus = 0
+CSNSAnalyserStatus = 0
+
Index: reduction/configure.xml
===================================================================
--- reduction/configure.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/configure.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,30 @@
+<?xml version="1.0" ?>
+<root>
+   <sample_scattering_detector>/SANS/RUN0000320/sample.nxs</sample_scattering_detector>
+   <sample_scattering_monitor>/SANS/RUN0000320/monitors.nxs</sample_scattering_monitor>
+   <sample_transmission>/SANS/RUN0000324/monitors.nxs</sample_transmission>
+   <cell_scattering_detector/>
+   <cell_scattering_monitor/>
+   <cell_transmission/>
+   <solvent_scattering_detector/>
+   <solvent_scattering_monitor/>
+   <solvent_transmission/>
+   <background_detector>/SANS/RUN0000307/sample.nxs</background_detector>
+   <background_monitor>/SANS/RUN0000307/monitors.nxs</background_monitor>
+   <direct>/SANS/RUN0000355/monitors.nxs</direct>
+   <efficiency_file>paramData/sens.dat</efficiency_file>
+   <flood_file>paramData/flood.dat</flood_file>
+   <calibration_file>paramData/cal_PS_fit.dat</calibration_file>
+   <mask_rmin>0.056</mask_rmin>
+   <mask_rmax>0.36</mask_rmax>
+   <wavelength_min>2.5</wavelength_min>
+   <wavelength_bin>0.001</wavelength_bin>
+   <wavelength_max>8.2</wavelength_max>
+   <qmin>0.012</qmin>
+   <qbin>0.0004</qbin>
+   <qmax>0.1</qmax>
+   <sample_volume>1</sample_volume>
+   <solid_angle_correction>True</solid_angle_correction>
+   <gravity_correction>True</gravity_correction>
+   <flood_correction>True</flood_correction>
+</root>
Index: reduction/getCalibration.py
===================================================================
--- reduction/getCalibration.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/getCalibration.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,183 @@
+# reduction without sensitivity and efficiency
+from mantid.simpleapi import *
+
+def mergeWS(prepath, wsList,output):
+    for name in wsList:
+        LoadNexus(Filename=prepath+'/'+name+'/'+output+'.nxs',OutputWorkspace=name)
+
+    for i in range(len(wsList)):
+        if len(wsList)== 1:
+            CloneWorkspace(InputWorkspace=wsList[i], OutputWorkspace=output)
+            DeleteWorkspace(Workspace=wsList[i])
+        elif wsList[i+1]!=wsList[-1]:
+            Plus(LHSWorkspace=wsList[i],RHSWorkspace=wsList[i+1], OutputWorkspace=wsList[i+1])
+            DeleteWorkspace(Workspace=wsList[i])
+        else:
+            Plus(LHSWorkspace=wsList[i],RHSWorkspace=wsList[i+1], OutputWorkspace=output)
+            DeleteWorkspace(Workspace=wsList[i])
+            DeleteWorkspace(Workspace=wsList[i+1])
+            break
+
+#sample scattering exp
+sample_run = ['RUN0000365']
+#sample transimission exp
+transam_run = ['RUN0000367']
+#direct for M3/M2
+trans_run=['RUN0000355','RUN0000343']
+#background
+empty_run=['RUN0000307']
+
+volume=0.20106
+wave_rebin='2.5,0.001,8.2'
+q_rebin='0.01,0.002,0.22'
+mlist=''
+for i in range(59):
+    start=60+(i)*125
+    end=64+(i)*125
+    mlist=mlist+str(start)+'-'+str(end)+','
+mlist=mlist+'7435-7439'
+
+prepath=sys.path[0]
+
+#calculate sample transmission
+mergeWS(prepath, transam_run, 'monitors')
+RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='monTranSam')
+mergeWS(prepath, trans_run,'monitors')
+RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='monTran')
+ConvertUnits(InputWorkspace='monTranSam', OutputWorkspace='monTranSam', Target='Wavelength', AlignBins=True)
+ConvertUnits(InputWorkspace='monTran', OutputWorkspace='monTran', Target='Wavelength', AlignBins=True)
+Rebin(InputWorkspace='monTranSam', OutputWorkspace="monTranSam", Params=wave_rebin)
+Rebin(InputWorkspace='monTran', OutputWorkspace="monTran", Params=wave_rebin)
+CalculateTransmission(SampleRunWorkspace='monTranSam', DirectRunWorkspace='monTran', OutputWorkspace='trans_sam', IncidentBeamMonitor=1, TransmissionMonitor=2, RebinParams=wave_rebin, FitMethod='Log', OutputUnfittedData=True)
+#Rebin(InputWorkspace='trans_sam', OutputWorkspace="trans_sam", Params=wave_rebin)
+DeleteWorkspace(Workspace='monTranSam')
+DeleteWorkspace(Workspace='monTran')
+
+
+#theory 
+#==========================================
+LoadRKH(Filename=prepath+'/paramData/bates_poly_theory2.dat', OutputWorkspace='theory', FirstColumnValue='MomentumTransfer')
+ConvertToHistogram(InputWorkspace='theory', OutputWorkspace='theory')
+Rebin(InputWorkspace='theory', OutputWorkspace='theory', Params=q_rebin)
+# sample and empty
+#========================================
+#LoadNexus(Filename="/home/dur/work/nexusData/SANS/"+sample_run[0]+"/sample.nxs", OutputWorkspace='sam')
+#LoadNexus(Filename="/home/dur/work/nexusData/SANS/"+empty_run[0]+"/sample.nxs", OutputWorkspace='empty')
+outer=0.360
+inner=0.056
+xml_inner='<infinite-cylinder id="beam_stop"><centre x="0" y="0" z="0.0" /><axis x="0" y="0" z="1" /><radius val= "'+str(inner)+'" /></infinite-cylinder><algebra val="beam_stop"/>'
+xml_outer='<infinite-cylinder id="beam_area"><centre x="0" y="0" z="0.0" /><axis x="0" y="0" z="1" /><radius val= "'+str(outer)+'" /></infinite-cylinder><algebra val="#beam_area"/>'
+
+#sample
+mergeWS(prepath, sample_run, 'sample')
+CloneWorkspace(InputWorkspace='sample',OutputWorkspace='sam_tmp')
+MaskDetectorsInShape(Workspace='sam_tmp', ShapeXML=xml_inner)
+MaskDetectorsInShape(Workspace='sam_tmp', ShapeXML=xml_outer)
+MaskDetectors(Workspace='sam_tmp',WorkspaceIndexList=mlist)
+ConvertUnits(InputWorkspace="sam_tmp", OutputWorkspace="sam_tmp", Target="Wavelength", AlignBins=True)
+Rebin(InputWorkspace='sam_tmp',OutputWorkspace='sam_tmp',Params=wave_rebin)
+
+mergeWS(prepath, sample_run,'monitors')
+RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='sam_m2')
+CropWorkspace(InputWorkspace="sam_m2", OutputWorkspace="sam_m2",StartWorkspaceIndex=0, EndWorkspaceIndex=0)
+ConvertUnits(InputWorkspace='sam_m2', OutputWorkspace='sam_m2', Target='Wavelength', AlignBins=True)
+Rebin(InputWorkspace='sam_m2',OutputWorkspace='sam_m2',Params=wave_rebin)
+Divide(LHSWorkspace='sam_tmp', RHSWorkspace='sam_m2', OutputWorkspace='sam_tmp', AllowDifferentNumberSpectra=True)
+ApplyTransmissionCorrection(InputWorkspace='sam_tmp',TransmissionWorkspace='trans_sam',OutputWorkspace='sam_tmp',ThetaDependent=True)
+
+#empty
+mergeWS(prepath, empty_run, 'sample')
+CloneWorkspace(InputWorkspace='sample',OutputWorkspace='empty_tmp')
+MaskDetectorsInShape(Workspace='empty_tmp', ShapeXML=xml_inner)
+MaskDetectorsInShape(Workspace='empty_tmp', ShapeXML=xml_outer)
+MaskDetectors(Workspace='empty_tmp',WorkspaceIndexList=mlist)
+ConvertUnits(InputWorkspace="empty_tmp", OutputWorkspace="empty_tmp", Target="Wavelength", AlignBins=True)
+Rebin(InputWorkspace='empty_tmp',OutputWorkspace='empty_tmp',Params=wave_rebin)
+mergeWS(prepath, empty_run,'monitors')
+RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='mon_empty')
+CropWorkspace(InputWorkspace="mon_empty", OutputWorkspace="empty_m2",StartWorkspaceIndex=0, EndWorkspaceIndex=0)
+ConvertUnits(InputWorkspace='empty_m2', OutputWorkspace='empty_m2', Target='Wavelength', AlignBins=True)
+RebinToWorkspace(WorkspaceToRebin='empty_m2',WorkspaceToMatch='empty_tmp',OutputWorkspace='empty_m2')
+Divide(LHSWorkspace='empty_tmp', RHSWorkspace='empty_m2', OutputWorkspace='empty_tmp', AllowDifferentNumberSpectra=True)
+
+cvalue=[]
+lvalue=[]
+
+for i in range(285):
+    lamda=2.51 + i * 0.02
+    lamda_min=lamda - 0.01
+    lamda_max=lamda + 0.01
+    CropWorkspace(InputWorkspace='sam_tmp',OutputWorkspace='sam_tmp_1',Xmin=lamda_min,Xmax=lamda_max)
+    CropWorkspace(InputWorkspace='empty_tmp',OutputWorkspace='bg_tmp_1',Xmin=lamda_min,Xmax=lamda_max)
+    
+    Q1D(DetBankWorkspace='sam_tmp_1', OutputWorkspace='IQ', OutputBinning=q_rebin, AccountForGravity=False, SolidAngleWeighting=True)
+    ReplaceSpecialValues(InputWorkspace='IQ', OutputWorkspace='IQ', NaNValue=0, InfinityValue=0)
+    Q1D(DetBankWorkspace='bg_tmp_1', OutputWorkspace='bg_IQ', OutputBinning=q_rebin, AccountForGravity=False, SolidAngleWeighting=True)
+    ReplaceSpecialValues(InputWorkspace='bg_IQ', OutputWorkspace='bg_IQ', NaNValue=0, InfinityValue=0)
+    Minus(LHSWorkspace='IQ', RHSWorkspace='bg_IQ',OutputWorkspace='IQ')
+
+    Divide(LHSWorkspace='IQ', RHSWorkspace='theory', OutputWorkspace='norm')
+    ReplaceSpecialValues(InputWorkspace='norm', OutputWorkspace='norm', NaNValue=0, InfinityValue=0)
+
+    name=mtd['norm']
+    value=name.readY(0)
+    sumvalue=0
+    num=0
+    for iy in value:
+        if iy > 0:
+            sumvalue=sumvalue+iy
+            num=num+1
+        else:
+            continue
+    cvalue.append(sumvalue/num/volume)
+    lvalue.append(lamda)
+
+from scipy.optimize import least_squares
+from scipy import exp,log
+
+def fexp(p, values):
+    a, b, c = p
+    x = values
+    return(a * exp(-x/b) + c)
+
+def ferr(p,x,y):
+    err=[]
+    for i in range(len(x)):
+        err.append(y[i]-fexp(p,x[i]))
+    #return y-fexp(p,x)
+    return err
+
+def fitData(x,y):
+    _b0=(x[0]-x[1])/(log(y[1])-log(y[0]))
+    _a0=y[0]/exp(-x[0]/_b0)
+    p0=[_a0, _b0, 0.]
+    p1 = least_squares(ferr, p0, args=(x, y))
+    p1=p1.x
+    print "xxxx", p0 , p1
+    xtmp=[]
+    ytmp=[]
+    for i in range(900):
+        xtmp.append(1+0.01*i)
+        ytmp.append(fexp(p1,xtmp[i]))
+
+    return xtmp, ytmp
+
+
+x,y=fitData(lvalue, cvalue)
+
+f0=open(prepath+'/paramData/calibration.dat','w')
+
+
+_s="SANS calibration file"
+f0.write("%s\n" % (_s))
+f0.write("\n")
+f0.write("%d    0    0    0    1    %d    0\n" % (len(x), len(x)))
+_s="        0        0        0        0"
+f0.write("%s\n" % (_s))
+_s="2 (F12.5,2E16.6)"
+f0.write("%s\n" % (_s))
+
+for i in range(len(x)):
+    f0.write("%f %f\n" % (x[i], y[i]))
+f0.close()
+
Index: reduction/main.py
===================================================================
--- reduction/main.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/main.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,988 @@
+#!/usr/bin/python
+# -*- coding: utf-8 -*-
+
+# configure
+
+'''
+Created on 2015.9.25
+'''
+
+from conf.constants import *
+from canvas import *
+import os
+import sys
+import json
+import atexit
+#import warnings
+import xml.etree.ElementTree as ET
+import reduction
+
+BL01data = {'transimission_sample':'./trans_sam.dat','transimission_cell':'./trans_cell.dat','transimission_solution':'./trans_sol.dat','background':'./bg_raw.dat','sample_raw':'./sam_raw.dat','sample_substract_bg':'./sam_bg.dat','sample_substract_cell':'./sam_cell.dat','sample_final':'./sam_IQ.dat','cell_raw':'./cell_raw.dat','cell_substract_bg':'./cell_bg.dat','solution_raw':'./sol_raw.dat','solution_subtract_bg':'./sol_bg.dat','solution_substract_cell':'./sol_cell.dat'}
+
+BL01list=['transimission_sample','transimission_cell','transimission_solution', 'background','cell_raw', 'cell_substract_bg', 'solution_raw',  'solution_subtract_bg', 'solution_substract_cell', 'sample_raw', 'sample_substract_bg', 'sample_substract_cell','sample_final']
+
+class mywindow(QtGui.QMainWindow):
+
+    def __init__(self, parent):
+        super(mywindow, self).__init__()
+        self.parent = parent
+        self.setupUi(self)
+	self.deleteData()
+
+    def setupUi(self, MainWindow):
+
+        self.first = QtGui.QFrame(self)
+        self.first.setFrameShape(QtGui.QFrame.StyledPanel)
+        self.scrollArea = QtGui.QScrollArea()
+        self.scrollArea.setWidgetResizable(True)
+        self.scrollArea.setWidget(self.first)
+
+        self.second = QtGui.QFrame(self)
+        self.second.setFrameShape(QtGui.QFrame.StyledPanel)
+        self.scrollArea2 = QtGui.QScrollArea()
+        self.scrollArea2.setWidgetResizable(True)
+        self.scrollArea2.setWidget(self.second)
+
+        self.splitter = QtGui.QSplitter(QtCore.Qt.Horizontal, self)
+        self.splitter.addWidget(self.scrollArea)
+        self.splitter.addWidget(self.scrollArea2)
+        self.splitter.setSizes([700, 500])
+
+        self.firstGrid = QtGui.QGridLayout(self.first)
+        self.secondGrid = QtGui.QGridLayout(self.second)
+   
+        _fileWidth=250 
+       
+        self.settingText = QtGui.QLabel('Settings: ',self.first)
+
+        self.okButton = QtGui.QPushButton('Do Reduction')
+        self.okButton.setMaximumHeight(30)
+        self.okButton.setMaximumWidth(_fileWidth)
+        self.okButton.clicked.connect(self.startReduction)
+
+        self.defaultButton = QtGui.QPushButton('Default')
+        self.defaultButton.setMaximumHeight(30)
+        self.defaultButton.setMaximumWidth(_fileWidth)
+        self.defaultButton.clicked.connect(self.setDefault)
+        
+        self.loadButton = QtGui.QPushButton('Load')
+        self.loadButton.setMaximumHeight(30)
+        self.loadButton.setMaximumWidth(_fileWidth)
+        self.loadButton.clicked.connect(self.loadSetting)
+
+        self.logo = QtGui.QLabel(self.first)
+        self.logo.setPixmap(QtGui.QPixmap("img/csns.png").scaledToHeight(64))
+
+        self.line1=QtGui.QFrame(self.first)
+        self.line1.setGeometry(QtCore.QRect())
+        self.line1.setFrameShape(QtGui.QFrame.HLine)
+        self.line1.setFrameShadow(QtGui.QFrame.Sunken)
+        
+        self.line2=QtGui.QFrame(self.first)
+        self.line2.setGeometry(QtCore.QRect())
+        self.line2.setFrameShape(QtGui.QFrame.HLine)
+        self.line2.setFrameShadow(QtGui.QFrame.Sunken)
+        
+        self.line3=QtGui.QFrame(self.first)
+        self.line3.setGeometry(QtCore.QRect())
+        self.line3.setFrameShape(QtGui.QFrame.HLine)
+        self.line3.setFrameShadow(QtGui.QFrame.Sunken)
+        
+        self.line4=QtGui.QFrame(self.first)
+        self.line4.setGeometry(QtCore.QRect())
+        self.line4.setFrameShape(QtGui.QFrame.HLine)
+        self.line4.setFrameShadow(QtGui.QFrame.Sunken)
+        
+        self.line5=QtGui.QFrame(self.first)
+        self.line5.setGeometry(QtCore.QRect())
+        self.line5.setFrameShape(QtGui.QFrame.HLine)
+        self.line5.setFrameShadow(QtGui.QFrame.Sunken)
+        #============================
+        self.sampleScattering = QtGui.QLabel('Sample Scattering Run: ',self.first)
+        self.sampleScatteringText = QtGui.QTextEdit('') 
+        self.sampleScatteringText.setMaximumHeight(30)
+        self.sampleScatteringText.setMaximumWidth(_fileWidth)
+        self.sampleScatteringLoad = QtGui.QPushButton('Load') 
+        self.sampleScatteringLoad.setMaximumHeight(30)
+        self.sampleScatteringLoad.setMaximumWidth(_fileWidth)
+        self.sampleScatteringLoad.clicked.connect(self.loadSampleScatteringFile)
+        
+        self.sampleTransmission = QtGui.QLabel('Sample Transmission Run',self.first)
+        self.sampleTransmissionText = QtGui.QTextEdit('') 
+        self.sampleTransmissionText.setMaximumHeight(30)
+        self.sampleTransmissionText.setMaximumWidth(_fileWidth)
+        self.sampleTransmissionLoad = QtGui.QPushButton('Load') 
+        self.sampleTransmissionLoad.setMaximumHeight(30)
+        self.sampleTransmissionLoad.setMaximumWidth(_fileWidth)
+        self.sampleTransmissionLoad.clicked.connect(self.loadSampleTransmissionFile)
+
+        #============================
+        self.cellScattering = QtGui.QLabel('Cell Scattering Run: ',self.first)
+        self.cellScatteringText = QtGui.QTextEdit('')   
+        self.cellScatteringText.setMaximumHeight(30)
+        self.cellScatteringText.setMaximumWidth(_fileWidth)
+        self.cellScatteringLoad = QtGui.QPushButton('Load')   
+        self.cellScatteringLoad.setMaximumHeight(30)
+        self.cellScatteringLoad.setMaximumWidth(_fileWidth)
+        self.cellScatteringLoad.clicked.connect(self.loadCellScatteringFile)
+
+        self.cellTransmission = QtGui.QLabel('Cell Transmission Run',self.first)
+        self.cellTransmissionText = QtGui.QTextEdit('')  
+        self.cellTransmissionText.setMaximumHeight(30)
+        self.cellTransmissionText.setMaximumWidth(_fileWidth)
+        self.cellTransmissionLoad = QtGui.QPushButton('Load')  
+        self.cellTransmissionLoad.setMaximumHeight(30)
+        self.cellTransmissionLoad.setMaximumWidth(_fileWidth)
+        self.cellTransmissionLoad.clicked.connect(self.loadCellTransmissionFile)
+
+        #============================
+        self.solventScattering = QtGui.QLabel('Solution Scattering Run: ',self.first)
+        self.solventScatteringText = QtGui.QTextEdit('')   
+        self.solventScatteringText.setMaximumHeight(30)
+        self.solventScatteringText.setMaximumWidth(_fileWidth)
+        self.solventScatteringLoad = QtGui.QPushButton('Load')   
+        self.solventScatteringLoad.setMaximumHeight(30)
+        self.solventScatteringLoad.setMaximumWidth(_fileWidth)
+        self.solventScatteringLoad.clicked.connect(self.loadSolventScatteringFile)
+
+        self.solventTransmission = QtGui.QLabel('Solution Transmission Run',self.first)
+        self.solventTransmissionText = QtGui.QTextEdit('')  
+        self.solventTransmissionText.setMaximumHeight(30)
+        self.solventTransmissionText.setMaximumWidth(_fileWidth)
+        self.solventTransmissionLoad = QtGui.QPushButton('Load')  
+        self.solventTransmissionLoad.setMaximumHeight(30)
+        self.solventTransmissionLoad.setMaximumWidth(_fileWidth)
+        self.solventTransmissionLoad.clicked.connect(self.loadSolventTransmissionFile)
+
+        #============================
+        self.background = QtGui.QLabel('Background Run: ',self.first)
+        self.backgroundText = QtGui.QTextEdit('')   
+        self.backgroundText.setMaximumHeight(30)
+        self.backgroundText.setMaximumWidth(_fileWidth)
+        self.backgroundLoad = QtGui.QPushButton('Load')   
+        self.backgroundLoad.setMaximumHeight(30)
+        self.backgroundLoad.setMaximumWidth(_fileWidth)
+        self.backgroundLoad.clicked.connect(self.loadBackgroundFile)
+
+        #============================
+        self.direct = QtGui.QLabel('Direct Run: ',self.first)
+        self.directText = QtGui.QTextEdit('')   
+        self.directText.setMaximumHeight(30)
+        self.directText.setMaximumWidth(_fileWidth)
+        self.directLoad = QtGui.QPushButton('Load')   
+        self.directLoad.setMaximumHeight(30)
+        self.directLoad.setMaximumWidth(_fileWidth)
+        self.directLoad.clicked.connect(self.loadDirectFile)
+
+        #============================
+        self.efficiency = QtGui.QLabel('Efficiency File: ',self.first)
+        self.efficiencyText = QtGui.QTextEdit('')
+        self.efficiencyText.setMaximumHeight(30)
+        self.efficiencyText.setMaximumWidth(_fileWidth)
+
+        self.efficiencyLoad = QtGui.QPushButton('Load')
+        self.efficiencyLoad.setMaximumHeight(30)
+        self.efficiencyLoad.setMaximumWidth(_fileWidth)
+        self.efficiencyLoad.clicked.connect(self.loadEfficiencyFile)
+
+        #============================
+        self.flood = QtGui.QLabel('Flood File: ',self.first)
+        self.floodText = QtGui.QTextEdit('')
+        self.floodText.setMaximumHeight(30)
+        self.floodText.setMaximumWidth(_fileWidth)
+
+        self.floodLoad = QtGui.QPushButton('Load')
+        self.floodLoad.setMaximumHeight(30)
+        self.floodLoad.setMaximumWidth(_fileWidth)
+        self.floodLoad.clicked.connect(self.loadFloodFile)
+
+        #============================
+        self.calibration = QtGui.QLabel('Calibration File: ',self.first)
+        self.calibrationText = QtGui.QTextEdit('')
+        self.calibrationText.setMaximumHeight(30)
+        self.calibrationText.setMaximumWidth(_fileWidth)
+
+        self.calibrationLoad = QtGui.QPushButton('Load')
+        self.calibrationLoad.setMaximumHeight(30)
+        self.calibrationLoad.setMaximumWidth(_fileWidth)
+        self.calibrationLoad.clicked.connect(self.loadCalibrationFile)
+
+        #============================
+        self.angleCheck = QtGui.QCheckBox('Solid Angle Correction', self)
+        self.gravityCheck = QtGui.QCheckBox('Gravity Correction', self)
+        self.floodCheck = QtGui.QCheckBox('Flood Correction', self)
+        
+        #============================
+        self.mask = QtGui.QLabel('Mask: ',self.first)
+        self.rmin = QtGui.QLabel('Rmin: ',self.first)
+        self.rminText = QtGui.QTextEdit('')
+        self.rminText.setMaximumHeight(30)
+        self.rminText.setMaximumWidth(_fileWidth)
+        
+        self.rmax = QtGui.QLabel('Rmax: ',self.first)
+        self.rmaxText = QtGui.QTextEdit('')
+        self.rmaxText.setMaximumHeight(30)
+        self.rmaxText.setMaximumWidth(_fileWidth)
+
+        #============================
+        self.wavelength = QtGui.QLabel('Wavelength: ',self.first)
+        self.lmin = QtGui.QLabel('min: ',self.first)
+        self.lminText = QtGui.QTextEdit('')
+        self.lminText.setMaximumHeight(30)
+        self.lminText.setMaximumWidth(_fileWidth)
+        
+        self.lbin = QtGui.QLabel('bin: ',self.first)
+        self.lbinText = QtGui.QTextEdit('')
+        self.lbinText.setMaximumHeight(30)
+        self.lbinText.setMaximumWidth(_fileWidth)
+
+        self.lmax = QtGui.QLabel('max: ',self.first)
+        self.lmaxText = QtGui.QTextEdit('')
+        self.lmaxText.setMaximumHeight(30)
+        self.lmaxText.setMaximumWidth(_fileWidth)
+
+        #============================
+        self.Q = QtGui.QLabel('Q: ',self.first)
+        self.qmin = QtGui.QLabel('min: ',self.first)
+        self.qminText = QtGui.QTextEdit('')
+        self.qminText.setMaximumHeight(30)
+        self.qminText.setMaximumWidth(_fileWidth)
+        
+        self.qbin = QtGui.QLabel('bin: ',self.first)
+        self.qbinText = QtGui.QTextEdit('')
+        self.qbinText.setMaximumHeight(30)
+        self.qbinText.setMaximumWidth(_fileWidth)
+
+        self.qmax = QtGui.QLabel('max: ',self.first)
+        self.qmaxText = QtGui.QTextEdit('')
+        self.qmaxText.setMaximumHeight(30)
+        self.qmaxText.setMaximumWidth(_fileWidth)
+
+        #============================
+        self.sampleVolume = QtGui.QLabel('Sample Volume: ',self.first)
+        self.sampleVolumeText = QtGui.QTextEdit('')
+        self.sampleVolumeText.setMaximumHeight(30)
+        self.sampleVolumeText.setMaximumWidth(_fileWidth)
+
+        #============================
+        _nline = 0
+        self.firstGrid.addWidget(self.logo, _nline, 0, 1, 4 , QtCore.Qt.AlignCenter)
+        
+        _nline+=1
+        self.firstGrid.addWidget(self.settingText, _nline, 0, 1,1 , QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.defaultButton, _nline, 1, 1,1 , QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.loadButton, _nline, 2, 1,1 , QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.okButton, _nline, 3, 1,2 , QtCore.Qt.AlignCenter)
+        
+        _nline+=1
+        self.firstGrid.addWidget(self.sampleScattering, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.sampleScatteringText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.sampleScatteringLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        _nline+=1
+        self.firstGrid.addWidget(self.sampleTransmission, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.sampleTransmissionText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.sampleTransmissionLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+       
+        _nline+=1 
+        self.firstGrid.addWidget(self.line1, _nline, 0, 1,4)
+        
+        _nline+=1
+        self.firstGrid.addWidget(self.cellScattering, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.cellScatteringText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.cellScatteringLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        _nline+=1
+        self.firstGrid.addWidget(self.cellTransmission, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.cellTransmissionText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.cellTransmissionLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+
+        _nline+=1 
+        self.firstGrid.addWidget(self.line2, _nline, 0, 1,4)
+        
+        _nline+=1
+        self.firstGrid.addWidget(self.solventScattering, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.solventScatteringText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.solventScatteringLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        _nline+=1
+        self.firstGrid.addWidget(self.solventTransmission, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.solventTransmissionText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.solventTransmissionLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+
+        _nline+=1 
+        self.firstGrid.addWidget(self.line3, _nline, 0, 1,4)
+        
+        _nline+=1
+        self.firstGrid.addWidget(self.background, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.backgroundText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.backgroundLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+
+        _nline+=1
+        self.firstGrid.addWidget(self.direct, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.directText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.directLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        
+        _nline+=1 
+        self.firstGrid.addWidget(self.line4, _nline, 0, 1,4)
+   
+        _nline+=1
+        self.firstGrid.addWidget(self.flood, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.floodText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.floodLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+
+        _nline+=1
+        self.firstGrid.addWidget(self.efficiency, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.efficiencyText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.efficiencyLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)     
+
+
+        _nline+=1
+        self.firstGrid.addWidget(self.calibration, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.calibrationText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.calibrationLoad, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+
+        _nline+=1 
+        self.firstGrid.addWidget(self.line5, _nline, 0, 1,4)
+        
+        _nline+=1
+        self.firstGrid.addWidget(self.mask, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.rmin, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.rmax, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        _nline+=1
+        self.firstGrid.addWidget(self.rminText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.rmaxText, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+
+        _nline+=1
+        self.firstGrid.addWidget(self.wavelength, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.lmin, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.lbin, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.lmax, _nline, 3, 1,1, QtCore.Qt.AlignLeft)
+        _nline+=1
+        self.firstGrid.addWidget(self.lminText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.lbinText, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.lmaxText, _nline, 3, 1,1, QtCore.Qt.AlignLeft)
+
+        _nline+=1
+        self.firstGrid.addWidget(self.Q, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.qmin, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.qbin, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.qmax, _nline, 3, 1,1, QtCore.Qt.AlignLeft)
+        _nline+=1
+        self.firstGrid.addWidget(self.qminText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.qbinText, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.qmaxText, _nline, 3, 1,1, QtCore.Qt.AlignLeft)
+
+        _nline+=1
+        self.firstGrid.addWidget(self.sampleVolume, _nline, 0, 1,1)
+        self.firstGrid.addWidget(self.sampleVolumeText, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+
+        _nline+=1
+        self.firstGrid.addWidget(self.angleCheck, _nline, 1, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.gravityCheck, _nline, 2, 1,1, QtCore.Qt.AlignLeft)
+        self.firstGrid.addWidget(self.floodCheck, _nline, 3, 1,1, QtCore.Qt.AlignLeft)
+
+
+
+        self.comboBox = QtGui.QComboBox(self.second)
+        for i in BL01list:
+            self.comboBox.addItem(i)
+        self.comboBox.activated.connect(self.plotData)
+
+        self.logcomboBox = QtGui.QComboBox(self.second)
+        self.logcomboBox.addItem('linear')
+        self.logcomboBox.addItem('log')
+        self.logcomboBox.activated.connect(self.logcomboBoxChange)
+        
+        self.canvas = zoomCanvas(
+            self.second,
+            16,
+            8,
+            150,
+            '',
+            '',
+            '',
+            '',
+           )
+
+        _nline = 0
+        self.secondGrid.addWidget(self.comboBox, _nline, 1, 1, 1, QtCore.Qt.AlignCenter)
+        self.secondGrid.addWidget(self.logcomboBox, _nline, 2, 1, 1, QtCore.Qt.AlignCenter)
+        _nline += 1
+        self.secondGrid.addWidget(self.canvas, _nline, 0, 1, 3, QtCore.Qt.AlignCenter)
+
+        #_mainWidth, _mainHeight=self.getDisplay()
+        #self.resize(_mainWidth, _mainHeight)
+
+        self.setCentralWidget(self.splitter)
+        self.setConfigure()
+
+        self.mainWidth = 0
+        self.mainHeight = 0
+
+    def plotData(self):
+        index = self.comboBox.currentIndex()
+        
+        _file=BL01data[BL01list[index]]
+        try:
+            _x,_y=self.readData(_file)
+            self.canvas.ax.clear()
+            self.canvas.ax.plot(_x, _y)
+    	    if self.logcomboBox.currentIndex()==1:
+    	        self.canvas.ax.set_xscale('log')
+    	        self.canvas.ax.set_yscale('log')
+    	    else:
+    	        self.canvas.ax.set_xscale('linear')
+    	        self.canvas.ax.set_yscale('linear')
+                
+            self.canvas.draw()
+        except:
+            self.canvas.ax.clear()
+            self.canvas.draw()
+
+    def logcomboBoxChange(self):
+        if self.logcomboBox.currentIndex()==1:
+            self.canvas.ax.set_xscale('log')
+            self.canvas.ax.set_yscale('log')
+        else:
+            self.canvas.ax.set_xscale('linear')
+            self.canvas.ax.set_yscale('linear')
+            
+        self.canvas.draw()
+        
+    def readData(self, filename):
+        self.x=[]
+        self.y=[]
+        f=open(filename, "rb")
+        for line in f.readlines()[2:]:
+            line=line.split(",")
+            self.x.append(float(line[0]))
+            self.y.append(float(line[1]))
+
+        return self.x, self.y
+
+    def deleteData(self):
+        _tmp = "rm -rf "+os.getcwd()+"/*.dat"
+        try:
+            subprocess.check_output(_tmp, shell=True)
+        except:
+            pass
+
+    def startReduction(self):
+        self.comboBox.setCurrentIndex(1)
+        configure = self.getSetting()
+        self.writeXml(configure)
+        self.deleteData()
+        _result= self.checkValue()
+        if _result:
+            reduction.Reduction()
+            self.comboBox.setCurrentIndex(len(BL01list)-1)
+
+    def checkValue(self):
+        _result = False
+        if self.sampleScatteringText.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Sample Scattering Run can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.sampleTransmissionText.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Sample Transmission Run can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.backgroundText.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Background Run can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.directText.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Direct Run can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.efficiencyText.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Efficiency File can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.floodText.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Flood File can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.calibrationText.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Calibration File can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.lmin.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Wavelength min can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.lbin.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Wavelength bin can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.lmax.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Wavelength max can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.qmin.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Q min can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.qbin.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Q bin can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.qmax.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Q max can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.rmin.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Mask Rmin can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.rmax.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Mask Rmax can not be empty.", QtGui.QMessageBox.Yes)
+        elif self.sampleVolumeText.toPlainText() == '':
+            msgBox = QtGui.QMessageBox.information(self,"Warning","Sample Volume can not be empty.", QtGui.QMessageBox.Yes)
+        else:
+            _result=True
+            
+        return _result
+    def deleteData(self):
+        _tmp="rm -rf "+os.getcwd()+"/*.dat"
+        try:
+            subprocess.check_output(_tmp, shell=True)
+        except:
+            pass
+
+    def loadSampleScatteringFile(self):
+        fileName=QtGui.QFileDialog.getExistingDirectory(self, 'load Sample Scattering Run', '/SANS/',  QtGui.QFileDialog.ShowDirsOnly | QtGui.QFileDialog.DontResolveSymlinks)
+        self.sampleScatteringText.setText(fileName)
+    
+    def loadSampleTransmissionFile(self):
+        fileName = QtGui.QFileDialog.getExistingDirectory(self, 'load Sample Transmission Run', '/SANS/',  QtGui.QFileDialog.ShowDirsOnly | QtGui.QFileDialog.DontResolveSymlinks)
+        self.sampleTransmissionText.setText(fileName)
+    
+    def loadCellScatteringFile(self):
+        fileName = QtGui.QFileDialog.getExistingDirectory(self, 'load Cell Scattering Run', '/SANS/',  QtGui.QFileDialog.ShowDirsOnly | QtGui.QFileDialog.DontResolveSymlinks)
+        self.cellScatteringText.setText(fileName)
+
+    def loadCellTransmissionFile(self):
+        fileName = QtGui.QFileDialog.getExistingDirectory(self, 'load Cell Transmission Run', '/SANS/',  QtGui.QFileDialog.ShowDirsOnly | QtGui.QFileDialog.DontResolveSymlinks)
+        self.cellTransmissionText.setText(fileName)
+
+    def loadSolventScatteringFile(self):
+        fileName = QtGui.QFileDialog.getExistingDirectory(self, 'load Solution Scattering Run', '/SANS/',  QtGui.QFileDialog.ShowDirsOnly | QtGui.QFileDialog.DontResolveSymlinks)
+        self.solventScatteringText.setText(fileName)
+
+    def loadSolventTransmissionFile(self):
+        fileName = QtGui.QFileDialog.getExistingDirectory(self, 'load Solvent Transmission Run', '/SANS/',  QtGui.QFileDialog.ShowDirsOnly | QtGui.QFileDialog.DontResolveSymlinks)
+        self.solventTransmissionText.setText(fileName)
+
+    def loadBackgroundFile(self):
+        fileName = QtGui.QFileDialog.getExistingDirectory(self, 'load Background Run', '/SANS/',  QtGui.QFileDialog.ShowDirsOnly | QtGui.QFileDialog.DontResolveSymlinks)
+        self.backgroundText.setText(fileName)
+
+    def loadDirectFile(self):
+        fileName = QtGui.QFileDialog.getOpenFileName(self, 'load Direct Run', './','')
+        self.backgroundText.setText(fileName)
+    
+    def loadEfficiencyFile(self):
+        fileName = QtGui.QFileDialog.getOpenFileName(self, 'load Efficiency File', './','')
+        self.efficiencyText.setText(fileName)
+
+    def loadFloodFile(self):
+        fileName = QtGui.QFileDialog.getOpenFileName(self, 'load Flood File', './','')
+        self.floodText.setText(fileName)
+        
+    def loadCalibrationFile(self):
+        fileName = QtGui.QFileDialog.getOpenFileName(self, 'load Calibration File', './','')
+        self.calibrationText.setText(fileName)
+
+    def getFileName(self, _file):
+        return os.path.basename(_file)
+
+    def setDefault(self):
+        self.floodText.setText('paramData/flood.dat')
+        self.calibrationText.setText('paramData/cal_PS_fit.dat')
+        self.efficiencyText.setText('paramData/sens.dat')
+        self.backgroundText.setText('/SANS/RUN0000307')
+        self.directText.setText(str('/SANS/RUN0000355'))
+        self.lminText.setText('2.5')
+        self.lbinText.setText('0.001')
+        self.lmaxText.setText('8.2')
+        self.qminText.setText('0.012')
+        self.qbinText.setText('0.0004')
+        self.qmaxText.setText('0.1')
+        self.rminText.setText('0.056')
+        self.rmaxText.setText('0.36')
+        self.gravityCheck.setChecked(True)
+        self.angleCheck.setChecked(True)
+        self.floodCheck.setChecked(True)
+
+    def getFilePath(self, _file):
+        _path=""
+        try:
+            _path=os.path.dirname(_file)
+        except:
+            _path=""
+
+        return _path
+
+    def loadSetting(self):
+        fileName=QtGui.QFileDialog.getOpenFileNames(self, 'load Setting', './*.xml')
+        configure = self.readXml(fileName[0])
+        self.setSetting(configure)
+        
+    def setSetting(self, configure):
+        self.sampleScatteringText.setText(self.getFilePath(configure['sample_scattering_detector']))
+        self.sampleTransmissionText.setText(self.getFilePath(configure['sample_transmission']))
+        self.cellScatteringText.setText(self.getFilePath(configure['cell_scattering_detector']))
+        self.cellTransmissionText.setText(self.getFilePath(configure['cell_transmission']))
+        self.solventScatteringText.setText(self.getFilePath(configure['solvent_scattering_detector']))
+        self.solventTransmissionText.setText(self.getFilePath(configure['solvent_transmission']))
+        
+        self.backgroundText.setText(self.getFilePath(configure['background_detector']))
+        self.directText.setText(self.getFilePath(configure['direct']))
+        
+        self.efficiencyText.setText(configure['efficiency_file'])
+        self.floodText.setText(configure['flood_file'])
+        self.calibrationText.setText(configure['calibration_file'])
+
+        self.lminText.setText(configure['wavelength_min'])
+        self.lbinText.setText(configure['wavelength_bin'])
+        self.lmaxText.setText(configure['wavelength_max'])
+        self.qminText.setText(configure['qmin'])
+        self.qbinText.setText(configure['qbin'])
+        self.qmaxText.setText(configure['qmax'])
+        self.rminText.setText(configure['mask_rmin'])
+        self.rmaxText.setText(configure['mask_rmax'])
+       
+        self.sampleVolumeText.setText(configure['sample_volume'])
+
+        if configure['solid_angle_correction']=="True": 
+            self.angleCheck.setChecked(True)
+        else:
+            self.angleCheck.setChecked(False)
+
+        if configure['gravity_correction']=="True": 
+            self.gravityCheck.setChecked(True)
+        else:
+            self.gravityCheck.setChecked(False)
+
+        if configure['flood_correction']=="True": 
+            self.floodCheck.setChecked(True)
+        else:
+            self.floodCheck.setChecked(False)
+
+    def getSetting(self):
+        configure={}
+       
+        _tmp=self.sampleScatteringText.toPlainText()
+        if _tmp !="":
+            if _tmp=="/":
+                pass
+            else:
+                _tmp+="/"
+            configure['sample_scattering_detector']=_tmp+"sample.nxs"
+            configure['sample_scattering_monitor']=_tmp+"monitors.nxs"
+        else:
+            configure['sample_scattering_detector']=""
+            configure['sample_scattering_monitor']=""
+
+        _tmp=self.sampleTransmissionText.toPlainText()
+        if _tmp !="":
+            if _tmp=="/":
+                pass
+            else:
+                _tmp+="/"
+            configure['sample_transmission']=_tmp+"monitors.nxs"
+        else:
+            configure['sample_transmission']=""
+
+        _tmp=self.cellScatteringText.toPlainText()
+        if _tmp !="":
+            if _tmp=="/":
+                pass
+            else:
+                _tmp+="/"
+            configure['cell_scattering_detector']=_tmp+"sample.nxs"
+            configure['cell_scattering_monitor']=_tmp+"monitors.nxs"
+        else:
+            configure['cell_scattering_detector']=""
+            configure['cell_scattering_monitor']=""
+
+        _tmp=self.cellTransmissionText.toPlainText()
+        if _tmp !="":
+            if _tmp=="/":
+                pass
+            else:
+                _tmp+="/"
+            configure['cell_transmission']=_tmp+"monitors.nxs"
+        else:
+            configure['cell_transmission']=""
+
+        _tmp=self.solventScatteringText.toPlainText()
+        if _tmp !="":
+            if _tmp=="/":
+                pass
+            else:
+                _tmp+="/"
+            configure['solvent_scattering_detector']=_tmp+"sample.nxs"
+            configure['solvent_scattering_monitor']=_tmp+"monitors.nxs"
+        else:
+            configure['solvent_scattering_detector']=""
+            configure['solvent_scattering_monitor']=""
+
+        _tmp=self.solventTransmissionText.toPlainText()
+        if _tmp !="":
+            if _tmp=="/":
+                pass
+            else:
+                _tmp+="/"
+            configure['solvent_transmission']=_tmp+"monitors.nxs"
+        else:
+            configure['solvent_transmission']=""
+
+        _tmp=self.backgroundText.toPlainText()
+        if _tmp !="":
+            if _tmp=="/":
+                pass
+            else:
+                _tmp+="/"
+            configure['background_detector']=_tmp+"sample.nxs"
+            configure['background_monitor']=_tmp+"monitors.nxs"
+        else:
+            configure['background_detector']=""
+            configure['background_monitor']=""
+
+        _tmp=self.directText.toPlainText()
+        if _tmp !="":
+            if _tmp=="/":
+                pass
+            else:
+                _tmp+="/"
+            configure['direct']=_tmp+"monitors.nxs"
+        else:
+            configure['direct']=""
+
+        _tmp=self.efficiencyText.toPlainText()
+        if _tmp !="":
+            configure['efficiency_file']=_tmp
+        else:
+            configure['efficiency_file']=""
+
+        _tmp=self.floodText.toPlainText()
+        if _tmp !="":
+            configure['flood_file']=_tmp
+        else:
+            configure['flood_file']=""
+
+        _tmp=self.calibrationText.toPlainText()
+        if _tmp !="":
+            configure['calibration_file']=_tmp
+        else:
+            configure['calibration_file']=""
+
+        if self.angleCheck.isChecked():
+            configure['solid_angle_correction']='True'
+        else:
+            configure['solid_angle_correction']='False'
+          
+        if self.gravityCheck.isChecked():
+            configure['gravity_correction']='True'
+        else:
+            configure['gravity_correction']='False'
+            
+        if self.floodCheck.isChecked():
+            configure['flood_correction']='True'
+        else:
+            configure['flood_correction']='False'
+
+        configure['mask_rmin'] = self.rminText.toPlainText()
+        configure['mask_rmax'] = self.rmaxText.toPlainText()
+
+        configure['wavelength_min'] = self.lminText.toPlainText()
+        configure['wavelength_bin'] = self.lbinText.toPlainText()
+        configure['wavelength_max'] = self.lmaxText.toPlainText()
+ 
+        configure['qmin'] = self.qminText.toPlainText()
+        configure['qbin'] = self.qbinText.toPlainText()
+        configure['qmax'] = self.qmaxText.toPlainText()
+
+        configure['sample_volume'] = self.sampleVolumeText.toPlainText()
+
+        return configure
+
+    def writeXml(self, configure):
+        top = ET.Element('root')
+
+        child = ET.SubElement(top, 'sample_scattering_detector')
+        child.text=configure['sample_scattering_detector']
+        child = ET.SubElement(top, 'sample_scattering_monitor')
+        child.text=configure['sample_scattering_monitor']
+    
+        child = ET.SubElement(top, 'sample_transmission')
+        child.text=configure['sample_transmission']
+    
+        child = ET.SubElement(top, 'cell_scattering_detector')
+        child.text=configure['cell_scattering_detector']
+        child = ET.SubElement(top, 'cell_scattering_monitor')
+        child.text=configure['cell_scattering_monitor']
+    
+        child = ET.SubElement(top, 'cell_transmission')
+        child.text=configure['cell_transmission']
+    
+        child = ET.SubElement(top, 'solvent_scattering_detector')
+        child.text=configure['solvent_scattering_detector']
+        child = ET.SubElement(top, 'solvent_scattering_monitor')
+        child.text=configure['solvent_scattering_monitor']
+    
+        child = ET.SubElement(top, 'solvent_transmission')
+        child.text=configure['solvent_transmission']
+
+        child = ET.SubElement(top, 'background_detector')
+        child.text=configure['background_detector']
+        child = ET.SubElement(top, 'background_monitor')
+        child.text=configure['background_monitor']
+    
+        child = ET.SubElement(top, 'direct')
+        child.text=configure['direct']
+    
+        child = ET.SubElement(top, 'efficiency_file')
+        child.text=configure['efficiency_file']
+
+        child = ET.SubElement(top, 'flood_file')
+        child.text=configure['flood_file']
+
+        child = ET.SubElement(top, 'calibration_file')
+        child.text=configure['calibration_file']
+    
+        child = ET.SubElement(top, 'mask_rmin')
+        child.text=configure['mask_rmin']
+
+        child = ET.SubElement(top, 'mask_rmax')
+        child.text=configure['mask_rmax']
+    
+        child = ET.SubElement(top, 'wavelength_min')
+        child.text=configure['wavelength_min']
+    
+        child = ET.SubElement(top, 'wavelength_bin')
+        child.text=configure['wavelength_bin']
+
+        child = ET.SubElement(top, 'wavelength_max')
+        child.text=configure['wavelength_max']
+
+        child = ET.SubElement(top, 'qmin')
+        child.text=configure['qmin']
+    
+        child = ET.SubElement(top, 'qbin')
+        child.text=configure['qbin']
+
+        child = ET.SubElement(top, 'qmax')
+        child.text=configure['qmax']
+    
+        child = ET.SubElement(top, 'sample_volume')
+        child.text=configure['sample_volume']
+   
+        child = ET.SubElement(top, 'solid_angle_correction')
+        child.text=configure['solid_angle_correction']
+
+        child = ET.SubElement(top, 'gravity_correction')
+        child.text=configure['gravity_correction']
+
+        child = ET.SubElement(top, 'flood_correction')
+        child.text=configure['flood_correction']
+ 
+        from xml.dom import minidom
+
+        xmlstr = minidom.parseString(ET.tostring(top)).toprettyxml(indent="   ")
+        with open("configure.xml", "w") as f:
+            f.write(xmlstr)
+
+    def readXml(self, filename):
+        tree = ET.parse(filename)
+        root = tree.getroot()
+
+        configure={}
+    
+        _tmp = root.findall('sample_scattering_detector')[0].text
+        configure['sample_scattering_detector']=_tmp
+        _tmp = root.findall('sample_scattering_monitor')[0].text
+        configure['sample_scattering_monitor']=_tmp
+    
+        _tmp = root.findall('sample_transmission')[0].text
+        configure['sample_transmission']=_tmp
+    
+        _tmp = root.findall('cell_scattering_detector')[0].text
+        configure['cell_scattering_detector']=_tmp
+        _tmp = root.findall('cell_scattering_monitor')[0].text
+        configure['cell_scattering_monitor']=_tmp
+    
+        _tmp = root.findall('cell_transmission')[0].text
+        configure['cell_transmission']=_tmp
+
+        _tmp = root.findall('solvent_scattering_detector')[0].text
+        configure['solvent_scattering_detector']=_tmp
+        _tmp = root.findall('solvent_scattering_monitor')[0].text
+        configure['solvent_scattering_monitor']=_tmp
+    
+        _tmp = root.findall('solvent_transmission')[0].text
+        configure['solvent_transmission']=_tmp
+    
+        _tmp = root.findall('background_detector')[0].text
+        configure['background_detector']=_tmp
+        _tmp = root.findall('background_monitor')[0].text
+        configure['background_monitor']=_tmp
+    
+        _tmp = root.findall('direct')[0].text
+        configure['direct']=_tmp
+    
+        _tmp = root.findall('efficiency_file')[0].text
+        configure['efficiency_file']=_tmp
+    
+        _tmp = root.findall('flood_file')[0].text
+        configure['flood_file']=_tmp
+
+        _tmp = root.findall('calibration_file')[0].text
+        configure['calibration_file']=_tmp
+
+        _tmp = root.findall('solid_angle_correction')[0].text
+        configure['solid_angle_correction']=_tmp
+
+        _tmp = root.findall('gravity_correction')[0].text
+        configure['gravity_correction']=_tmp
+
+        _tmp = root.findall('flood_correction')[0].text
+        configure['flood_correction']=_tmp
+    
+        _tmp = root.findall('mask_rmin')[0].text
+        configure['mask_rmin']=_tmp
+        _tmp = root.findall('mask_rmax')[0].text
+        configure['mask_rmax']=_tmp
+    
+        _tmp = root.findall('wavelength_min')[0].text
+        configure['wavelength_min']=_tmp
+        _tmp = root.findall('wavelength_bin')[0].text
+        configure['wavelength_bin']=_tmp
+        _tmp = root.findall('wavelength_max')[0].text
+        configure['wavelength_max']=_tmp
+
+        _tmp = root.findall('qmin')[0].text
+        configure['qmin']=_tmp
+        _tmp = root.findall('qbin')[0].text
+        configure['qbin']=_tmp
+        _tmp = root.findall('qmax')[0].text
+        configure['qmax']=_tmp
+
+        _tmp = root.findall('sample_volume')[0].text
+        configure['sample_volume']=_tmp
+
+        return configure
+
+    def getDisplay(self):
+        screen_resolution = self.parent.desktop().screenGeometry()
+        return screen_resolution.width(), screen_resolution.height()
+
+    def setConfigure(self):
+        _file='setting.xml'
+        configure = self.readXml(_file)
+        self.setSetting(configure)
+        #self.resize(self.mainWidth, self.mainHeight)
+
+    def saveConfigure(self):
+        _mainWidth=self.splitter.geometry().width()
+        _mainHeight=self.splitter.geometry().height()
+
+        _data = {"mainWidth": _mainWidth, "mainHeight": _mainHeight}
+        
+        _confFile='./conf/configure.json'
+        if not os.path.exists(_confFile):
+            with open(_confFile, "w") as _f:
+                json.dump(_data, _f)
+        else:
+            with open(_confFile, "w") as _f:
+                json.dump(_data, _f)
+
+    def getApp(self):
+        return self.parent
+
+def exit_handler(top):
+    #top.saveConfigure()
+    pass
+    
+if __name__ == '__main__':
+    
+    myapp = QtGui.QApplication(sys.argv)
+    
+    mytop = mywindow(myapp)
+    mytop.setWindowTitle('SANS Data Reduction V0.2')
+    mytop.show()
+
+    atexit.register(exit_handler, mytop)
+    sys.exit(myapp.exec_())
Index: reduction/paramData/bates_poly_theory.dat
===================================================================
--- reduction/paramData/bates_poly_theory.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/paramData/bates_poly_theory.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,130 @@
+ SANS Thu 28-OCT-2016 12:23 W 26  sensitivity
+
+125    0    0    0    1    125    0
+        0        0        0        0
+2 (F12.5,2E16.6)
+0.002	77.978304481144
+0.004	72.3560268462656
+0.006	64.2757447719185
+0.008	55.1383553951896
+0.01	46.1587229099494
+0.012	38.117646591731
+0.014	31.3465866514612
+0.016	25.8546787328571
+0.018	21.4839735576184
+0.02	18.0252381021099
+0.022	15.280303759556
+0.024	13.0851455043492
+0.026	11.3122928564454
+0.028	9.86537052885604
+0.03	8.67212579187462
+0.032	7.67830261626584
+0.034	6.84288604494389
+0.036	6.13458983912708
+0.038	5.52931064819514
+0.04	5.00829034655706
+0.042	4.55678544613088
+0.044	4.16309719999901
+0.046	3.81785863204854
+0.048	3.51350558706284
+0.05	3.24388058698181
+0.052	3.00393336052728
+0.054	2.78949238177897
+0.056	2.5970890429831
+0.058	2.42382119295836
+0.06	2.26724637528875
+0.062	2.12529766320974
+0.064	1.99621682634402
+0.066	1.87850089425014
+0.068	1.77085915185528
+0.07	1.67217831538957
+0.072	1.58149416649008
+0.074	1.49796831744417
+0.076	1.42086907811754
+0.078	1.34955562073295
+0.08	1.28346481091115
+0.082	1.22210020575525
+0.084	1.16502282213042
+0.086	1.11184335794416
+0.088	1.06221561157129
+0.09	1.01583089362892
+0.092	0.97241326412597
+0.094	0.931715458885093
+0.096	0.893515393810409
+0.098	0.857613155389964
+0.1	0.823828401807216
+0.102	0.791998111987969
+0.104	0.761974630447945
+0.106	0.733623964416058
+0.108	0.70682429677001
+0.11	0.681464684134318
+0.112	0.657443914294267
+0.114	0.634669501062018
+0.116	0.613056798044479
+0.118	0.592528215528141
+0.12	0.573012527011695
+0.122	0.554444253862006
+0.124	0.536763118207147
+0.126	0.519913555563948
+0.128	0.503844279869678
+0.13	0.488507894582963
+0.132	0.473860544366789
+0.134	0.459861602590067
+0.136	0.446473390503527
+0.138	0.433660924476878
+0.14	0.421391688140855
+0.142	0.409635426671251
+0.144	0.398363960791844
+0.146	0.387551018367114
+0.148	0.377172081710628
+0.15	0.367204248956439
+0.152	0.357626108033685
+0.154	0.34841762195272
+0.156	0.339560024258027
+0.158	0.331035723631798
+0.16	0.32282821674478
+0.162	0.314922008550068
+0.164	0.307302539302614
+0.166	0.299956117664027
+0.168	0.292869859319961
+0.17	0.286031630597307
+0.172	0.279429996621393
+0.174	0.273054173600418
+0.176	0.266893984866043
+0.178	0.260939820336174
+0.18	0.255182599098984
+0.182	0.249613734846658
+0.184	0.244225103913607
+0.186	0.239009015697391
+0.188	0.233958185261592
+0.19	0.229065707938689
+0.192	0.224325035767896
+0.194	0.219729955618055
+0.196	0.215274568859325
+0.198	0.210953272459664
+0.2	0.206760741393164
+0.202	0.202691912257261
+0.204	0.198741968004836
+0.206	0.19490632370538
+0.208	0.191180613256744
+0.21	0.187560676975644
+0.212	0.184042550001185
+0.214	0.180622451451085
+0.216	0.177296774275332
+0.218	0.174062075756457
+0.22	0.170915068609811
+0.222	0.167852612640904
+0.224	0.164871706920347
+0.226	0.161969482440025
+0.228	0.159143195216971
+0.23	0.156390219814055
+0.232	0.153708043248925
+0.234	0.151094259264867
+0.236	0.148546562939205
+0.238	0.146062745606728
+0.24	0.143640690077268
+0.242	0.141278366128138
+0.244	0.138973826253511
+0.246	0.13672520165415
+0.248	0.134530698452081
+0.25	0.132388594115922
Index: reduction/paramData/bates_poly_theory2.dat
===================================================================
--- reduction/paramData/bates_poly_theory2.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/paramData/bates_poly_theory2.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,130 @@
+ SANS Thu 28-OCT-2016 12:23 W 26  theory
+
+125    0    0    0    1    125    0
+        0        0        0        0
+2 (F12.5,2E16.6)
+0.002	383.02888
+0.004	254.45495
+0.006	155.11705
+0.008	97.75467
+0.01	65.74774
+0.012	46.86056
+0.014	34.96083
+0.016	27.03158
+0.018	21.50167
+0.02	17.49943
+0.022	14.51314
+0.024	12.22754
+0.026	10.44026
+0.028	9.01679
+0.03	7.86497
+0.032	6.92002
+0.034	6.13531
+0.036	5.47663
+0.038	4.91842
+0.04	4.44126
+0.042	4.03022
+0.044	3.67364
+0.046	3.36232
+0.048	3.08891
+0.05	2.84751
+0.052	2.63331
+0.054	2.44239
+0.056	2.27148
+0.058	2.11789
+0.06	1.97936
+0.062	1.85398
+0.064	1.74014
+0.066	1.63646
+0.068	1.54178
+0.07	1.45508
+0.072	1.37548
+0.074	1.30224
+0.076	1.2347
+0.078	1.17228
+0.08	1.11447
+0.082	1.06083
+0.084	1.01097
+0.086	0.96455
+0.088	0.92125
+0.09	0.8808
+0.092	0.84295
+0.094	0.8075
+0.096	0.77423
+0.098	0.74298
+0.1	0.71358
+0.102	0.68589
+0.104	0.65978
+0.106	0.63514
+0.108	0.61185
+0.11	0.58981
+0.112	0.56895
+0.114	0.54918
+0.116	0.53041
+0.118	0.51259
+0.12	0.49566
+0.122	0.47955
+0.124	0.46421
+0.126	0.4496
+0.128	0.43567
+0.13	0.42237
+0.132	0.40968
+0.134	0.39754
+0.136	0.38594
+0.138	0.37484
+0.14	0.36421
+0.142	0.35403
+0.144	0.34427
+0.146	0.3349
+0.148	0.32592
+0.15	0.31729
+0.152	0.30899
+0.154	0.30102
+0.156	0.29336
+0.158	0.28598
+0.16	0.27888
+0.162	0.27203
+0.164	0.26544
+0.166	0.25909
+0.168	0.25296
+0.17	0.24704
+0.172	0.24133
+0.174	0.23582
+0.176	0.23049
+0.178	0.22534
+0.18	0.22036
+0.182	0.21555
+0.184	0.21089
+0.186	0.20638
+0.188	0.20201
+0.19	0.19778
+0.192	0.19368
+0.194	0.18971
+0.196	0.18586
+0.198	0.18212
+0.2	0.1785
+0.202	0.17498
+0.204	0.17157
+0.206	0.16826
+0.208	0.16504
+0.21	0.16191
+0.212	0.15887
+0.214	0.15591
+0.216	0.15304
+0.218	0.15025
+0.22	0.14753
+0.222	0.14488
+0.224	0.14231
+0.226	0.1398
+0.228	0.13736
+0.23	0.13498
+0.232	0.13266
+0.234	0.1304
+0.236	0.1282
+0.238	0.12606
+0.24	0.12397
+0.242	0.12193
+0.244	0.11994
+0.246	0.11799
+0.248	0.1161
+0.25	0.11425
Index: reduction/paramData/calibration.dat
===================================================================
--- reduction/paramData/calibration.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/paramData/calibration.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,905 @@
+SANS calibration file
+
+900    0    0    0    1    900    0
+        0        0        0        0
+2 (F12.5,2E16.6)
+1.000000 86.679834
+1.010000 86.255108
+1.020000 85.832626
+1.030000 85.412376
+1.040000 84.994345
+1.050000 84.578523
+1.060000 84.164898
+1.070000 83.753458
+1.080000 83.344191
+1.090000 82.937087
+1.100000 82.532133
+1.110000 82.129318
+1.120000 81.728632
+1.130000 81.330062
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Index: reduction/paramData/calibration_old.dat
===================================================================
--- reduction/paramData/calibration_old.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/paramData/calibration_old.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,290 @@
+ SANS Thu 28-OCT-2016 12:23 W 26  sensitivity
+
+285    0    0    0    1    285    0
+        0        0        0        0
+2 (F12.5,2E16.6)
+2.51   56.2494436871
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Index: reduction/paramData/eff.txt
===================================================================
--- reduction/paramData/eff.txt	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/paramData/eff.txt	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,1005 @@
+ SANS Thu 28-OCT-2016 12:23 W 26  sensitivity
+
+1000    0    0    0    1    1000    0
+        0        0        0        0
+2 (F12.5,2E16.6)
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Index: reduction/paramData/flood.dat
===================================================================
--- reduction/paramData/flood.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/paramData/flood.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,15005 @@
+ SANS Thu 28-OCT-2016 12:23 W 26  sensitivity
+
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Index: reduction/paramData/monitor.xml
===================================================================
--- reduction/paramData/monitor.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/paramData/monitor.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,41 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<instrument xmlns="http://www.mantidproject.org/IDF/1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.mantidproject.org/IDF/1.0 Schema/IDFSchema.xsd" name="sans" valid-from="2017-05-01 00:00:00" valid-to="2019-05-01 00:00:00" last-modified="2017-10-12 00:00:00">
+    <defaults>
+        <length unit="meter" />
+        <angle unit="degree" />
+        <reference-frame>
+            <along-beam axis="z" />
+            <pointing-up axis="y" />
+            <handedness val="right" />
+        </reference-frame>
+    </defaults>
+    <component type="moderator">
+        <location x="0" y="0" z="-11.8" />
+    </component>
+    <type is="Source" name="moderator" />
+    <component type="sample-position">
+        <location x="0.0" y="0.0" z="0.0" />
+    </component>
+    <type is="SamplePos" name="sample-position" />
+    <component type="monitor" idlist="monitor-list2" name="GEM2">
+        <location x="0.0" y="0.0" z="-0.61485" />
+    </component>
+    <component type="monitor" idlist="monitor-list3" name="GEM3">
+        <location x="0.0" y="0.0" z="0.548" />
+    </component>
+    <type name="monitor" is="monitor">
+        <cuboid id="pixel-shape">
+            <left-front-bottom-point x="-0.032" y="-0.0255" z="0.00005" />
+            <left-front-top-point x="-0.032" y="0.0255" z="0.00005" />
+            <left-back-bottom-point x="-0.032" y="-0.0255" z="-0.00005" />
+            <right-front-bottom-point x="0.032" y="-0.0255" z="0.00005" />
+        </cuboid>
+        <algebra val="pixel-shape" />
+    </type>
+    <idlist idname="monitor-list2">
+        <id val="1" />
+    </idlist>
+    <idlist idname="monitor-list3">
+        <id val="2" />
+    </idlist>
+</instrument>
Index: reduction/paramData/sens.dat
===================================================================
--- reduction/paramData/sens.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/paramData/sens.dat	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,1004 @@
+ SANS Thu 28-OCT-2016 12:23 W 26  sensitivity
+
+999    0    0    0    1    999    0
+        0        0        0        0
+2 (F12.5,2E16.6)
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Index: reduction/reduction.py
===================================================================
--- reduction/reduction.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/reduction.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,357 @@
+from mantid.simpleapi import *
+import sys
+import time
+import xml.etree.ElementTree as ET
+
+def readXml(file):
+    tree = ET.parse(file)
+    root = tree.getroot()
+    configure={}
+    _tmp = root.findall('sample_scattering_detector')[0].text
+    configure['sample_scattering_detector']=_tmp
+    _tmp = root.findall('sample_scattering_monitor')[0].text
+    configure['sample_scattering_monitor']=_tmp
+    _tmp = root.findall('cell_scattering_detector')[0].text
+    configure['cell_scattering_detector']=_tmp
+    _tmp = root.findall('cell_scattering_monitor')[0].text
+    configure['cell_scattering_monitor']=_tmp
+    _tmp = root.findall('solvent_scattering_detector')[0].text
+    configure['solvent_scattering_detector']=_tmp
+    _tmp = root.findall('solvent_scattering_monitor')[0].text
+    configure['solvent_scattering_monitor']=_tmp
+    _tmp = root.findall('solvent_transmission')[0].text
+    configure['solvent_transmission']=_tmp
+    _tmp = root.findall('cell_transmission')[0].text
+    configure['cell_transmission']=_tmp
+    _tmp = root.findall('sample_transmission')[0].text
+    configure['sample_transmission']=_tmp
+    _tmp = root.findall('direct')[0].text
+    configure['direct']=_tmp
+    _tmp = root.findall('background_detector')[0].text
+    configure['background_detector']=_tmp
+    _tmp = root.findall('background_monitor')[0].text
+    configure['background_monitor']=_tmp
+    _tmp = root.findall('efficiency_file')[0].text
+    configure['efficiency_file']=_tmp
+    _tmp = root.findall('flood_file')[0].text
+    configure['flood_file']=_tmp
+    _tmp = root.findall('calibration_file')[0].text
+    configure['calibration_file']=_tmp
+    _tmp = root.findall('solid_angle_correction')[0].text
+    configure['solid_angle_correction']=_tmp
+    _tmp = root.findall('gravity_correction')[0].text
+    configure['gravity_correction']=_tmp
+    _tmp = root.findall('flood_file')[0].text
+    configure['flood']=_tmp
+    _tmp = root.findall('mask_rmin')[0].text
+    configure['mask_rmin']=_tmp
+    _tmp = root.findall('mask_rmax')[0].text
+    configure['mask_rmax']=_tmp
+    _tmp = root.findall('wavelength_min')[0].text
+    configure['wavelength_min']=_tmp
+    _tmp = root.findall('wavelength_bin')[0].text
+    configure['wavelength_bin']=_tmp
+    _tmp = root.findall('wavelength_max')[0].text
+    configure['wavelength_max']=_tmp
+    _tmp = root.findall('qmin')[0].text
+    configure['qmin']=_tmp
+    _tmp = root.findall('qbin')[0].text
+    configure['qbin']=_tmp
+    _tmp = root.findall('qmax')[0].text
+    configure['qmax']=_tmp
+    _tmp = root.findall('sample_volume')[0].text
+    configure['sample_volume']=_tmp
+    return configure
+
+def mergeWS(wsList,output):
+    for name in wsList:
+        print name
+        LoadNexus(Filename=name,OutputWorkspace=name)
+
+    for i in range(len(wsList)):
+        if len(wsList)== 1:
+            CloneWorkspace(InputWorkspace=wsList[i], OutputWorkspace=output)
+            DeleteWorkspace(Workspace=wsList[i])
+        elif wsList[i+1]!=wsList[-1]:
+            Plus(LHSWorkspace=wsList[i],RHSWorkspace=wsList[i+1], OutputWorkspace=wsList[i+1])
+            DeleteWorkspace(Workspace=wsList[i])
+        else:
+            Plus(LHSWorkspace=wsList[i],RHSWorkspace=wsList[i+1], OutputWorkspace=output)
+            DeleteWorkspace(Workspace=wsList[i])
+            DeleteWorkspace(Workspace=wsList[i+1])
+            break
+
+def ScatterData(detRun,monRun,xml_inner,xml_outer,wave_rebin,sensWS,output,monSUM, mlist):
+    mergeWS(detRun, 'tmp')
+    MaskDetectorsInShape(Workspace='tmp', ShapeXML=xml_inner)
+    MaskDetectorsInShape(Workspace='tmp', ShapeXML=xml_outer)
+    MaskDetectors(Workspace='tmp',WorkspaceIndexList=mlist)
+    ConvertUnits(InputWorkspace="tmp", OutputWorkspace="tmp", Target="Wavelength", AlignBins=True)
+    Rebin(InputWorkspace='tmp',OutputWorkspace='tmp',Params=wave_rebin)
+    mergeWS(monRun,'monitors')
+    RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='m2')
+    CropWorkspace(InputWorkspace="m2", OutputWorkspace="m2",StartWorkspaceIndex=0, EndWorkspaceIndex=0)
+    ConvertUnits(InputWorkspace='m2', OutputWorkspace='m2', Target='Wavelength', AlignBins=True)
+    Rebin(InputWorkspace='m2',OutputWorkspace='m2',Params=wave_rebin)
+    if monSUM:
+        name=mtd['m2']
+        value=sum(name.readY(0))
+        CreateSingleValuedWorkspace(OutputWorkspace='m2', DataValue=value)
+    else:
+        Divide(LHSWorkspace="m2", RHSWorkspace=sensWS, OutputWorkspace="m2", AllowDifferentNumberSpectra=True)
+    Divide(LHSWorkspace="tmp", RHSWorkspace="m2", OutputWorkspace=output, AllowDifferentNumberSpectra=True)
+    DeleteWorkspace(Workspace='tmp')
+    DeleteWorkspace(Workspace='m2')
+                
+
+def CalTrans(transam_run, trans_run, output, prepath, wave_rebin):
+    mergeWS(transam_run, 'monitors')
+    RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='monTranSam')
+    mergeWS(trans_run,'monitors')
+    RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='monTran')
+    ConvertUnits(InputWorkspace='monTranSam', OutputWorkspace='monTranSam', Target='Wavelength', AlignBins=True)
+    ConvertUnits(InputWorkspace='monTran', OutputWorkspace='monTran', Target='Wavelength', AlignBins=True)
+    Rebin(InputWorkspace='monTranSam', OutputWorkspace="monTranSam", Params=wave_rebin)
+    Rebin(InputWorkspace='monTran', OutputWorkspace="monTran", Params=wave_rebin)
+    CalculateTransmission(SampleRunWorkspace='monTranSam', DirectRunWorkspace='monTran', OutputWorkspace=output, IncidentBeamMonitor=1, TransmissionMonitor=2, RebinParams=wave_rebin, FitMethod='Log', OutputUnfittedData=True)
+    #Rebin(InputWorkspace='trans_sam', OutputWorkspace="trans_sam", Params=wave_rebin)
+    #SaveAscii(InputWorkspace='trans_sam_unfitted' ,Filename=sys.path[0]+'/'+output+'.dat')
+    SaveAscii(InputWorkspace='trans_sam_unfitted' ,Filename=prepath+'/'+output+'.dat')
+    DeleteWorkspace(Workspace='monTranSam')
+    DeleteWorkspace(Workspace='monTran')
+
+def convertQ(gravityCorr, solidAngleCorr, calWS, q_rebin, input1, output, prepath):
+    if gravityCorr and not solidAngleCorr:
+        Q1D(DetBankWorkspace=input1, OutputWorkspace=output, OutputBinning=q_rebin,WavelengthAdj=calWS,AccountForGravity=True, SolidAngleWeighting=False)
+    if not gravityCorr and solidAngleCorr:
+        Q1D(DetBankWorkspace=input1, OutputWorkspace=output, OutputBinning=q_rebin,WavelengthAdj=calWS,AccountForGravity=False, SolidAngleWeighting=True)
+    if not gravityCorr and not solidAngleCorr:
+        Q1D(DetBankWorkspace=input1, OutputWorkspace=output, OutputBinning=q_rebin,WavelengthAdj=calWS,AccountForGravity=False, SolidAngleWeighting=False)
+    if gravityCorr and solidAngleCorr:
+        Q1D(DetBankWorkspace=input1, OutputWorkspace=output, OutputBinning=q_rebin,WavelengthAdj=calWS,AccountForGravity=True, SolidAngleWeighting=True)
+    #SaveAscii(InputWorkspace=output ,Filename=sys.path[0]+'/bg_raw.dat')
+    SaveAscii(InputWorkspace=output ,Filename=prepath+'/'+output+'.dat')
+
+#use PS
+def Reduction():
+    monSUM=False
+
+    conf=readXml('configure.xml')
+    #print conf['cell_transmission']
+
+    sam_run_det=[]
+    if conf['sample_scattering_detector'] is not None:
+        sam_run_det.append(conf['sample_scattering_detector'])
+    sam_run_mon=[]
+    if conf['sample_scattering_monitor'] is not None:
+        sam_run_mon.append(conf['sample_scattering_monitor'])
+    cell_run_det=[]
+    if conf['cell_scattering_detector'] is not None:
+        cell_run_det.append(conf['cell_scattering_detector'])
+    cell_run_mon=[]
+    if conf['cell_scattering_monitor'] is not None:
+        cell_run_mon.append(conf['cell_scattering_monitor'])
+    sol_run_det=[]
+    if conf['solvent_scattering_detector'] is not None:
+        sol_run_det.append(conf['solvent_scattering_detector'])
+    sol_run_mon=[]
+    if conf['solvent_scattering_monitor'] is not None:
+        sol_run_mon.append(conf['solvent_scattering_monitor'])
+
+    transam_run=[]
+    if conf['sample_transmission'] is not None:
+        transam_run.append(conf['sample_transmission'])
+    trancell_run=[]
+    if conf['cell_transmission'] is not None:
+        trancell_run.append(conf['cell_transmission'])
+    transol_run=[]
+    if conf['solvent_transmission'] is not None:
+        transol_run.append(conf['solvent_transmission'])
+
+    trans_run=[]
+    if conf['direct'] is not None:
+        trans_run.append(conf['direct'])
+
+    empty_run_det=[]
+    if conf['background_detector'] is not None:
+        empty_run_det.append(conf['background_detector'])
+    empty_run_mon=[]
+    if conf['background_monitor'] is not None:
+        empty_run_mon.append(conf['background_monitor'])
+
+    flood_file=[]
+    if conf['flood_file'] is not None:
+        flood_file.append(conf['flood_file'])
+    cal_file=[]
+    if conf['calibration_file'] is not None:
+        cal_file.append(conf['calibration_file'])
+    sens_file=[]
+    if conf['efficiency_file'] is not None:
+        sens_file.append(conf['efficiency_file'])
+
+    if conf['sample_volume'] is not None:
+        volume=float(conf['sample_volume'])
+    else:
+        volume=1.0
+
+    if conf['qmin'] is not None:
+        q1=float(conf['qmin'])
+    else:
+        q1=0.012
+    if conf['qbin'] is not None:
+        q2=float(conf['qbin'])
+    else:
+        q2=0.0004
+    if conf['qmax'] is not None:
+        q3=float(conf['qmax'])
+    else:
+        q3=0.1
+    q_rebin=str(q1)+','+str(q2)+','+str(q3)
+
+    if conf['wavelength_min'] is not None:
+        w1=float(conf['wavelength_min'])
+    else:
+        w1=2.5
+    if conf['wavelength_bin'] is not None:
+        w2=float(conf['wavelength_bin'])
+    else:
+        w2=0.001
+    if conf['wavelength_max'] is not None:
+        w3=float(conf['wavelength_max'])
+    else:
+        w3=8.2
+    wave_rebin=str(w1)+','+str(w2)+','+str(w3)
+
+    tmp=conf['gravity_correction']
+    if tmp == 'True':
+        gravityCorr=True
+    else:
+        gravityCorr=False
+    tmp=conf['solid_angle_correction']
+    if tmp == 'True':
+        solidAngleCorr=True
+    else:
+        solidAngleCorr=False
+
+    if conf['mask_rmin'] is not None:
+        inner=float(conf['mask_rmin'])
+    else:
+        inner=0.056
+    if conf['mask_rmax'] is not None:
+        outer=float(conf['mask_rmax'])
+    else:
+        outer=0.36
+
+    mlist=''
+    for i in range(59):
+        start=60+(i)*125
+        end=64+(i)*125
+        mlist=mlist+str(start)+'-'+str(end)+','
+    mlist=mlist+'7435-7439'
+    xml_inner='<infinite-cylinder id="beam_stop"><centre x="0" y="0" z="0.0" /><axis x="0" y="0" z="1" /><radius val= "'+str(inner)+'" /></infinite-cylinder><algebra val="beam_stop"/>'
+    xml_outer='<infinite-cylinder id="beam_area"><centre x="0" y="0" z="0.0" /><axis x="0" y="0" z="1" /><radius val= "'+str(outer)+'" /></infinite-cylinder><algebra val="#beam_area"/>'
+    gravityCorr=True
+    solidAngleCorr=True
+    prepath=sys.path[0]
+
+    be=time.time()
+    CreateSingleValuedWorkspace(OutputWorkspace='volume', DataValue=volume)
+    #calculate sample transmission
+    if len(transam_run)>0 and len(trans_run)>0:
+        CalTrans(transam_run, trans_run, 'trans_sam', prepath, wave_rebin)
+    else:
+        pass
+    if len(trancell_run)>0 and len(trans_run)>0:
+        CalTrans(trancell_run, trans_run, 'trans_cell', prepath, wave_rebin)
+    else:
+        pass
+    if len(transol_run)>0 and len(trans_run)>0:
+        CalTrans(transol_run, trans_run, 'trans_sol',prepath, wave_rebin)
+    else:
+        pass
+
+    if len(cal_file)>0:
+        LoadRKH(Filename=cal_file[0], OutputWorkspace='cal', FirstColumnValue='Wavelength')
+        ConvertToHistogram(InputWorkspace='cal', OutputWorkspace='cal')
+        #SmoothData(InputWorkspace='cal', OutputWorkspace='cal', NPoints=31)
+        Rebin(InputWorkspace='cal', OutputWorkspace='cal', Params=wave_rebin)
+    else:
+        pass
+
+    if len(flood_file)>0:
+        LoadRKH(Filename=flood_file[0], OutputWorkspace='flood', FirstColumnValue='SpectrumNumber')
+    else:
+        pass
+
+    if len(sens_file)>0:
+        LoadRKH(Filename=sens_file[0], OutputWorkspace='sensitivity',FirstColumnValue='Wavelength')
+        ConvertToHistogram(InputWorkspace='sensitivity', OutputWorkspace='sensitivity')
+        Rebin(InputWorkspace='sensitivity', OutputWorkspace="sens_rebin", Params=wave_rebin)
+    else:
+        pass
+
+    #bg
+    if len(empty_run_det)>0:
+        ScatterData(empty_run_det,empty_run_mon,xml_inner,xml_outer,wave_rebin,'sens_rebin','empty_tmp', monSUM, mlist)
+        convertQ(gravityCorr, solidAngleCorr, 'cal', q_rebin, 'empty_tmp', 'bg_raw', prepath)
+    else:
+        pass
+
+    #sample
+    if len(sam_run_det)>0:
+        ScatterData(sam_run_det,sam_run_mon,xml_inner,xml_outer,wave_rebin,'sens_rebin','sam_tmp', monSUM, mlist)
+        if len(transam_run)>0:
+            ApplyTransmissionCorrection(InputWorkspace='sam_tmp',TransmissionWorkspace='trans_sam',OutputWorkspace='sam_tmp',ThetaDependent=True)
+        else:
+            pass
+        convertQ(gravityCorr, solidAngleCorr, 'cal', q_rebin, 'sam_tmp', 'sam_raw', prepath)
+        Minus(LHSWorkspace='sam_raw', RHSWorkspace='bg_raw',OutputWorkspace='sam_bg')
+        SaveAscii(InputWorkspace='sam_bg' ,Filename=prepath+'sam_bg.dat')
+    else:
+        pass
+
+    #cell
+    if len(cell_run_det)>0:
+        ScatterData(cell_run_det,cell_run_mon,xml_inner,xml_outer,wave_rebin,'sens_rebin','cell_tmp', monSUM, mlist)
+        if len(trancell_run)>0:
+            ApplyTransmissionCorrection(InputWorkspace='cell_tmp',TransmissionWorkspace='trans_cell',OutputWorkspace='cell_tmp',ThetaDependent=True)
+        else:
+            pass
+        convertQ(gravityCorr, solidAngleCorr, 'cal', q_rebin, 'cell_tmp', 'cell_raw',prepath)
+        Minus(LHSWorkspace='cell_raw', RHSWorkspace='bg_raw',OutputWorkspace='cell_bg')
+        SaveAscii(InputWorkspace='cell_bg' ,Filename=prepath+'cell_bg.dat')
+    else:
+        pass
+
+    #solution
+    if len(sol_run_det)>0:
+        ScatterData(sol_run_det,sol_run_mon,xml_inner,xml_outer,wave_rebin,'sens_rebin','sol_tmp', monSUM, mlist)
+        if len(transol_run)>0:
+            ApplyTransmissionCorrection(InputWorkspace='sol_tmp',TransmissionWorkspace='trans_sol',OutputWorkspace='sol_tmp',ThetaDependent=True)
+        else:
+            pass
+        convertQ(gravityCorr, solidAngleCorr, 'cal', q_rebin, 'sol_tmp', 'sol_raw',prepath)
+        Minus(LHSWorkspace='sol_raw', RHSWorkspace='bg_raw',OutputWorkspace='sol_bg')
+        SaveAscii(InputWorkspace='sol_bg' ,Filename=prepath+'sol_bg.dat')
+    else:
+        pass
+
+    #sample - cell
+    if len(cell_run_det)== 0:
+        Divide(LHSWorkspace="sam_bg", RHSWorkspace='volume', OutputWorkspace="sam_bg", AllowDifferentNumberSpectra=True)
+        SaveAscii(InputWorkspace='sam_bg', Filename=prepath+'/sam_IQ.dat')
+    else:
+        Minus(LHSWorkspace='sam_bg', RHSWorkspace='cell_bg',OutputWorkspace='sam_cell')
+        SaveAscii(InputWorkspace='sam_cell', Filename=prepath+'/sam_cell.dat')
+
+    if len(sol_run_det)>0 and len(cell_run_det)>0:
+        Minus(LHSWorkspace='sol_bg', RHSWorkspace='cell_bg',OutputWorkspace='sol_cell')
+        SaveAscii(InputWorkspace='sol_cell', Filename=prepath+'/sol_cell.dat')
+        Minus(LHSWorkspace='sam_cell', RHSWorkspace='sol_cell',OutputWorkspace='sam_IQ')
+        Divide(LHSWorkspace="sam_IQ", RHSWorkspace='volume', OutputWorkspace="sam_IQ", AllowDifferentNumberSpectra=True)
+        SaveAscii(InputWorkspace='sam_IQ', Filename=prepath+'/sam_IQ.dat')
+    elif len(sol_run_det)==0 and len(cell_run_det)>0:
+        Divide(LHSWorkspace="sam_cell", RHSWorkspace='volume', OutputWorkspace="sam_cell", AllowDifferentNumberSpectra=True)
+        SaveAscii(InputWorkspace='sam_cell', Filename=prepath+'/sam_IQ.dat')
+
+    print time.time()-be,' seconds'
Index: reduction/script.py
===================================================================
--- reduction/script.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/script.py	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,81 @@
+from mantid.simpleapi import *
+
+def mergeWS(wsList,output):
+    for name in wsList:
+        LoadNexus(Filename='/SANS/'+name+'/'+output+'.nxs',OutputWorkspace=name)
+
+    for i in range(len(wsList)):
+        if len(wsList)== 1:
+            CloneWorkspace(InputWorkspace=wsList[i], OutputWorkspace=output)
+            DeleteWorkspace(Workspace=wsList[i])
+        elif wsList[i+1]!=wsList[-1]:
+            Plus(LHSWorkspace=wsList[i],RHSWorkspace=wsList[i+1], OutputWorkspace=wsList[i+1])
+            DeleteWorkspace(Workspace=wsList[i])
+        else:
+            Plus(LHSWorkspace=wsList[i],RHSWorkspace=wsList[i+1], OutputWorkspace=output)
+            DeleteWorkspace(Workspace=wsList[i])
+            DeleteWorkspace(Workspace=wsList[i+1])
+            break
+
+#use bates_poly
+sample_run = ['RUN0000365']
+transam_run = ['RUN0000367']
+
+trans_run=['RUN0000355','RUN0000343']
+empty_run=['RUN0000307']
+wave_rebin='2.5,0.001,8.2'
+q_rebin='0.01,0.002,0.22'
+mlist=''
+for i in range(59):
+    start=60+(i)*125
+    end=64+(i)*125
+    mlist=mlist+str(start)+'-'+str(end)+','
+mlist=mlist+'7435-7439'
+
+prepath='/root/Desktop/SANSoffline'
+
+#calculate sample transmission
+mergeWS(transam_run, 'monitors')
+RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='monTranSam')
+mergeWS(trans_run,'monitors')
+RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='monTran')
+ConvertUnits(InputWorkspace='monTranSam', OutputWorkspace='monTranSam', Target='Wavelength', AlignBins=True)
+ConvertUnits(InputWorkspace='monTran', OutputWorkspace='monTran', Target='Wavelength', AlignBins=True)
+Rebin(InputWorkspace='monTranSam', OutputWorkspace="monTranSam", Params=wave_rebin)
+Rebin(InputWorkspace='monTran', OutputWorkspace="monTran", Params=wave_rebin)
+CalculateTransmission(SampleRunWorkspace='monTranSam', DirectRunWorkspace='monTran', OutputWorkspace='trans_sam', IncidentBeamMonitor=1, TransmissionMonitor=2, RebinParams=wave_rebin, FitMethod='Log', OutputUnfittedData=True)
+#Rebin(InputWorkspace='trans_sam', OutputWorkspace="trans_sam", Params=wave_rebin)
+DeleteWorkspace(Workspace='monTranSam')
+DeleteWorkspace(Workspace='monTran')
+
+
+# sample and empty
+#========================================
+outer=0.360
+inner=0.056
+xml_inner='<infinite-cylinder id="beam_stop"><centre x="0" y="0" z="0.0" /><axis x="0" y="0" z="1" /><radius val= "'+str(inner)+'" /></infinite-cylinder><algebra val="beam_stop"/>'
+xml_outer='<infinite-cylinder id="beam_area"><centre x="0" y="0" z="0.0" /><axis x="0" y="0" z="1" /><radius val= "'+str(outer)+'" /></infinite-cylinder><algebra val="#beam_area"/>'
+
+#sample
+mergeWS(sample_run, 'sample')
+CloneWorkspace(InputWorkspace='sample',OutputWorkspace='sam_tmp')
+MaskDetectorsInShape(Workspace='sam_tmp', ShapeXML=xml_inner)
+MaskDetectorsInShape(Workspace='sam_tmp', ShapeXML=xml_outer)
+MaskDetectors(Workspace='sam_tmp',WorkspaceIndexList=mlist)
+ConvertUnits(InputWorkspace="sam_tmp", OutputWorkspace="sam_tmp", Target="Wavelength", AlignBins=True)
+Rebin(InputWorkspace='sam_tmp',OutputWorkspace='sam_tmp',Params=wave_rebin)
+
+mergeWS(sample_run,'monitors')
+RenameWorkspace(InputWorkspace='monitors',OutputWorkspace='sam_m2')
+CropWorkspace(InputWorkspace="sam_m2", OutputWorkspace="sam_m2",StartWorkspaceIndex=0, EndWorkspaceIndex=0)
+ConvertUnits(InputWorkspace='sam_m2', OutputWorkspace='sam_m2', Target='Wavelength', AlignBins=True)
+Rebin(InputWorkspace='sam_m2',OutputWorkspace='m2',Params=wave_rebin)
+Divide(LHSWorkspace='sam_tmp', RHSWorkspace='m2', OutputWorkspace='sam_tmp', AllowDifferentNumberSpectra=True)
+ApplyTransmissionCorrection(InputWorkspace='sam_tmp',TransmissionWorkspace='trans_sam',OutputWorkspace='sam_tmp',ThetaDependent=True)
+# single wavelength
+CropWorkspace(InputWorkspace='sam_tmp',OutputWorkspace='sam_tmp_1',Xmin=2.79,Xmax=2.81)
+Q1D(DetBankWorkspace='sam_tmp_1', OutputWorkspace='IQ', OutputBinning=0.01,0.01,0.5, AccountForGravity=False, SolidAngleWeighting=True)
+
+Qxy(InputWorkspace='sam_tmp', OutputWorkspace='sam_qxy', MaxQxy=0.5, DeltaQ=0.01, AccountForGravity=True, SolidAngleWeighting=True)
+
+
Index: reduction/setting.xml
===================================================================
--- reduction/setting.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
+++ reduction/setting.xml	(revision 44f51bb8f7689ad66f6cd4155c721ca0590550ce)
@@ -0,0 +1,30 @@
+<?xml version="1.0" ?>
+<root>
+   <sample_scattering_detector>/home/dur/work/nexusData/SANS/RUN0000320/sample.nxs</sample_scattering_detector>
+   <sample_scattering_monitor>/home/dur/work/nexusData/SANS/RUN0000320/monitors.nxs</sample_scattering_monitor>
+   <sample_transmission>/home/dur/work/nexusData/SANS/RUN0000324/monitors.nxs</sample_transmission>
+   <cell_scattering_detector>/home/dur/work/nexusData/SANS/RUN0000362/sample.nxs</cell_scattering_detector>
+   <cell_scattering_monitor>/home/dur/work/nexusData/SANS/RUN0000362/monitors.nxs</cell_scattering_monitor>
+   <cell_transmission/>
+   <solvent_scattering_detector>/home/dur/work/nexusData/SANS/RUN0000329/sample.nxs</solvent_scattering_detector>
+   <solvent_scattering_monitor>/home/dur/work/nexusData/SANS/RUN0000329/monitors.nxs</solvent_scattering_monitor>
+   <solvent_transmission>/home/dur/work/nexusData/SANS/RUN0000326/monitors.nxs</solvent_transmission>
+   <background_detector>/home/dur/work/nexusData/SANS/RUN0000307/sample.nxs</background_detector>
+   <background_monitor>/home/dur/work/nexusData/SANS/RUN0000307/monitors.nxs</background_monitor>
+   <direct>/home/dur/work/nexusData/SANS/RUN0000355/monitors.nxs</direct>
+   <efficiency_file>./paramData/sens.dat</efficiency_file>
+   <flood_file>./paramData/flood.dat</flood_file>
+   <calibration_file>./paramData/cal_PS_fit.dat</calibration_file>
+   <mask_rmin>0.056</mask_rmin>
+   <mask_rmax>0.36</mask_rmax>
+   <wavelength_min>2.5</wavelength_min>
+   <wavelength_bin>0.001</wavelength_bin>
+   <wavelength_max>8.2</wavelength_max>
+   <qmin>0.012</qmin>
+   <qbin>0.0004</qbin>
+   <qmax>0.1</qmax>
+   <sample_volume/>
+   <solid_angle_correction>True</solid_angle_correction>
+   <gravity_correction>True</gravity_correction>
+   <flood_correction>True</flood_correction>
+</root>
